Hb_000589_220

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig589: 227502-237245
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50089: 222932-227919 , PASA_asmbl_50090: 233596-233807 , PASA_asmbl_50091: 236145-236778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_220 0.0 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_000236_110 0.0913540467 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
3 Hb_013749_060 0.1268065014 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
4 Hb_003894_100 0.1293683751 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
5 Hb_000778_020 0.1321449331 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
6 Hb_001410_010 0.1357805659 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
7 Hb_057079_020 0.1362987254 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002928_180 0.136685279 - - catalase CAT1 [Manihot esculenta]
9 Hb_003371_140 0.1417453513 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
10 Hb_002218_070 0.1435233658 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
11 Hb_005880_010 0.1477512522 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
12 Hb_004218_160 0.148945683 - - NBS-LRR type disease resistance protein [Medicago truncatula]
13 Hb_002447_150 0.1525968605 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_008175_030 0.1539716257 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
15 Hb_010253_020 0.1600352289 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_000527_140 0.1681135629 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
17 Hb_008667_060 0.1739947461 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
18 Hb_002600_010 0.1753955909 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
19 Hb_007850_010 0.1754006425 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
20 Hb_000059_130 0.1754658506 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_220 Hb_000589_220 Hb_000236_110 Hb_000236_110 Hb_000589_220--Hb_000236_110 Hb_013749_060 Hb_013749_060 Hb_000589_220--Hb_013749_060 Hb_003894_100 Hb_003894_100 Hb_000589_220--Hb_003894_100 Hb_000778_020 Hb_000778_020 Hb_000589_220--Hb_000778_020 Hb_001410_010 Hb_001410_010 Hb_000589_220--Hb_001410_010 Hb_057079_020 Hb_057079_020 Hb_000589_220--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000236_110--Hb_002928_180 Hb_002218_070 Hb_002218_070 Hb_000236_110--Hb_002218_070 Hb_000236_110--Hb_000778_020 Hb_022501_020 Hb_022501_020 Hb_000236_110--Hb_022501_020 Hb_000236_110--Hb_013749_060 Hb_013749_060--Hb_057079_020 Hb_013749_060--Hb_001410_010 Hb_002928_120 Hb_002928_120 Hb_013749_060--Hb_002928_120 Hb_111985_040 Hb_111985_040 Hb_013749_060--Hb_111985_040 Hb_001369_160 Hb_001369_160 Hb_003894_100--Hb_001369_160 Hb_002447_150 Hb_002447_150 Hb_003894_100--Hb_002447_150 Hb_008667_060 Hb_008667_060 Hb_003894_100--Hb_008667_060 Hb_003894_100--Hb_002928_180 Hb_002122_080 Hb_002122_080 Hb_003894_100--Hb_002122_080 Hb_008175_030 Hb_008175_030 Hb_000778_020--Hb_008175_030 Hb_000778_020--Hb_057079_020 Hb_000778_020--Hb_002928_180 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_001410_010--Hb_002218_070 Hb_001410_010--Hb_057079_020 Hb_011310_200 Hb_011310_200 Hb_001410_010--Hb_011310_200 Hb_001410_010--Hb_000236_110 Hb_001410_010--Hb_002928_180 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010 Hb_057079_020--Hb_011310_200 Hb_057079_020--Hb_008175_030 Hb_057079_020--Hb_010253_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.702638 8.96808 1.34277 3.67817 0.322491 0.239195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.906711 0.37503 0.160801 5.4254 2.8495

CAGE analysis