Hb_000589_260

Information

Type -
Description -
Location Contig589: 262275-265013
Sequence    

Annotation

kegg
ID rcu:RCOM_1000650
description 3-hydroxybutyryl-CoA dehydratase, putative (EC:4.2.1.17)
nr
ID XP_002519236.1
description 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]
swissprot
ID P52046
description Short-chain-enoyl-CoA hydratase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=crt PE=1 SV=1
trembl
ID B9RZR7
description 3-hydroxybutyryl-CoA dehydratase, putative OS=Ricinus communis GN=RCOM_1000650 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable enoyl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50099: 262439-265024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_260 0.0 - - 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]
2 Hb_001427_110 0.0918695757 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
3 Hb_007423_040 0.1010338523 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
4 Hb_001534_050 0.1033059719 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
5 Hb_000172_640 0.1041579635 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
6 Hb_002192_010 0.1074034374 - - -
7 Hb_002486_040 0.107535033 - - -
8 Hb_000342_100 0.1090480413 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
9 Hb_007317_150 0.1102348511 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
10 Hb_000796_210 0.1139043607 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027472_040 0.1158704855 - - SKP1 [Hevea brasiliensis]
12 Hb_000462_130 0.1161483072 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
13 Hb_000032_270 0.1162369044 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
14 Hb_003126_080 0.1180681785 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
15 Hb_001143_130 0.1186116159 - - peroxidase 2 [Hevea brasiliensis]
16 Hb_000109_090 0.1195076848 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
17 Hb_002217_510 0.1200329771 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000610_050 0.1214687307 - - skp1, putative [Ricinus communis]
19 Hb_007576_080 0.1217568205 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
20 Hb_000331_470 0.1221474001 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]

Gene co-expression network

sample Hb_000589_260 Hb_000589_260 Hb_001427_110 Hb_001427_110 Hb_000589_260--Hb_001427_110 Hb_007423_040 Hb_007423_040 Hb_000589_260--Hb_007423_040 Hb_001534_050 Hb_001534_050 Hb_000589_260--Hb_001534_050 Hb_000172_640 Hb_000172_640 Hb_000589_260--Hb_000172_640 Hb_002192_010 Hb_002192_010 Hb_000589_260--Hb_002192_010 Hb_002486_040 Hb_002486_040 Hb_000589_260--Hb_002486_040 Hb_000028_590 Hb_000028_590 Hb_001427_110--Hb_000028_590 Hb_000020_060 Hb_000020_060 Hb_001427_110--Hb_000020_060 Hb_000331_470 Hb_000331_470 Hb_001427_110--Hb_000331_470 Hb_001653_020 Hb_001653_020 Hb_001427_110--Hb_001653_020 Hb_002995_020 Hb_002995_020 Hb_001427_110--Hb_002995_020 Hb_005730_120 Hb_005730_120 Hb_007423_040--Hb_005730_120 Hb_007576_080 Hb_007576_080 Hb_007423_040--Hb_007576_080 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120 Hb_000462_130 Hb_000462_130 Hb_001534_050--Hb_000462_130 Hb_003125_200 Hb_003125_200 Hb_001534_050--Hb_003125_200 Hb_028995_040 Hb_028995_040 Hb_001534_050--Hb_028995_040 Hb_004491_010 Hb_004491_010 Hb_001534_050--Hb_004491_010 Hb_000771_120 Hb_000771_120 Hb_001534_050--Hb_000771_120 Hb_003078_040 Hb_003078_040 Hb_001534_050--Hb_003078_040 Hb_005365_030 Hb_005365_030 Hb_000172_640--Hb_005365_030 Hb_124953_020 Hb_124953_020 Hb_000172_640--Hb_124953_020 Hb_004800_060 Hb_004800_060 Hb_000172_640--Hb_004800_060 Hb_000172_640--Hb_002192_010 Hb_000172_640--Hb_027472_040 Hb_002078_140 Hb_002078_140 Hb_000172_640--Hb_002078_140 Hb_002192_010--Hb_124953_020 Hb_002192_010--Hb_002078_140 Hb_005773_060 Hb_005773_060 Hb_002192_010--Hb_005773_060 Hb_000610_050 Hb_000610_050 Hb_002192_010--Hb_000610_050 Hb_003126_080 Hb_003126_080 Hb_002486_040--Hb_003126_080 Hb_007590_050 Hb_007590_050 Hb_002486_040--Hb_007590_050 Hb_002685_170 Hb_002685_170 Hb_002486_040--Hb_002685_170 Hb_002486_040--Hb_004491_010 Hb_003185_080 Hb_003185_080 Hb_002486_040--Hb_003185_080 Hb_000537_080 Hb_000537_080 Hb_002486_040--Hb_000537_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9026 21.635 18.9085 15.4255 29.1261 16.3417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.4294 39.3028 14.1618 26.1801 6.78988

CAGE analysis