Hb_000589_270

Information

Type -
Description -
Location Contig589: 266724-267890
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G233700g
description hypothetical protein
nr
ID XP_012088862.1
description PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067LKR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01429 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50100: 266445-267913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_270 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
2 Hb_002007_310 0.1015048939 - - cyclin family protein [Populus trichocarpa]
3 Hb_000665_040 0.102232403 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
4 Hb_002368_050 0.1049634041 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007908_020 0.1057578759 - - zinc finger family protein [Populus trichocarpa]
6 Hb_002681_020 0.1099793023 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_021068_050 0.1153252399 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
8 Hb_003057_120 0.1154038535 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_002411_200 0.1157380247 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000152_140 0.1180581766 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
11 Hb_007508_070 0.1184421951 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
12 Hb_001439_120 0.1191153417 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007919_050 0.1197165714 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
14 Hb_033491_010 0.1208900968 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
15 Hb_001366_200 0.1209241381 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000029_030 0.1217694969 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
17 Hb_003052_100 0.1224097981 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000282_060 0.1232132404 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
19 Hb_004812_010 0.1237793054 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
20 Hb_000049_120 0.1243681158 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_270 Hb_000589_270 Hb_002007_310 Hb_002007_310 Hb_000589_270--Hb_002007_310 Hb_000665_040 Hb_000665_040 Hb_000589_270--Hb_000665_040 Hb_002368_050 Hb_002368_050 Hb_000589_270--Hb_002368_050 Hb_007908_020 Hb_007908_020 Hb_000589_270--Hb_007908_020 Hb_002681_020 Hb_002681_020 Hb_000589_270--Hb_002681_020 Hb_021068_050 Hb_021068_050 Hb_000589_270--Hb_021068_050 Hb_002007_310--Hb_000665_040 Hb_003728_020 Hb_003728_020 Hb_002007_310--Hb_003728_020 Hb_007508_070 Hb_007508_070 Hb_002007_310--Hb_007508_070 Hb_001439_120 Hb_001439_120 Hb_002007_310--Hb_001439_120 Hb_000029_030 Hb_000029_030 Hb_002007_310--Hb_000029_030 Hb_033491_010 Hb_033491_010 Hb_002007_310--Hb_033491_010 Hb_002411_200 Hb_002411_200 Hb_000665_040--Hb_002411_200 Hb_000091_090 Hb_000091_090 Hb_000665_040--Hb_000091_090 Hb_003151_050 Hb_003151_050 Hb_000665_040--Hb_003151_050 Hb_000567_260 Hb_000567_260 Hb_000665_040--Hb_000567_260 Hb_000665_040--Hb_007508_070 Hb_006693_030 Hb_006693_030 Hb_002368_050--Hb_006693_030 Hb_002368_050--Hb_000029_030 Hb_000956_010 Hb_000956_010 Hb_002368_050--Hb_000956_010 Hb_000025_200 Hb_000025_200 Hb_002368_050--Hb_000025_200 Hb_011224_080 Hb_011224_080 Hb_002368_050--Hb_011224_080 Hb_002368_050--Hb_007908_020 Hb_007908_020--Hb_000025_200 Hb_002027_130 Hb_002027_130 Hb_007908_020--Hb_002027_130 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_000120_950 Hb_000120_950 Hb_007908_020--Hb_000120_950 Hb_000001_020 Hb_000001_020 Hb_007908_020--Hb_000001_020 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_001776_110 Hb_001776_110 Hb_002681_020--Hb_001776_110 Hb_003052_100 Hb_003052_100 Hb_002681_020--Hb_003052_100 Hb_004812_010 Hb_004812_010 Hb_002681_020--Hb_004812_010 Hb_002681_020--Hb_000665_040 Hb_004310_030 Hb_004310_030 Hb_002681_020--Hb_004310_030 Hb_008554_020 Hb_008554_020 Hb_002681_020--Hb_008554_020 Hb_000376_050 Hb_000376_050 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_022250_040 Hb_022250_040 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.4863 27.2404 6.13673 24.8931 81.7612 71.7784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.405 54.9095 94.1518 14.1516 16.0232

CAGE analysis