Hb_000589_280

Information

Type -
Description -
Location Contig589: 276081-277846
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20880g
description POPTRDRAFT_805502; hypothetical protein
nr
ID XP_012088851.1
description PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
swissprot
ID Q9CAY3
description Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1
trembl
ID A0A067L934
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01427 PE=4 SV=1
Gene Ontology
ID GO:0016746
description glycerol-3-phosphate acyltransferase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_280 0.0 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
2 Hb_010839_040 0.0236079736 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
3 Hb_000462_100 0.0241081669 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_100786_010 0.0264679284 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
5 Hb_002835_030 0.0366838423 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
6 Hb_002758_020 0.0520232418 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
7 Hb_005464_040 0.0626628391 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_018709_010 0.0632673145 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_000563_080 0.0661531048 - - -
10 Hb_020141_020 0.0662957169 - - -
11 Hb_166232_010 0.0734219113 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
12 Hb_020025_020 0.0781978351 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
13 Hb_028013_010 0.0789957413 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_001301_020 0.079197083 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
15 Hb_000025_250 0.0806675378 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
16 Hb_003188_020 0.0852576174 - - chitinase, putative [Ricinus communis]
17 Hb_032717_030 0.0875273339 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
18 Hb_001165_040 0.0949538158 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
19 Hb_000828_030 0.0950467107 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_178389_020 0.0953217797 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000589_280 Hb_000589_280 Hb_010839_040 Hb_010839_040 Hb_000589_280--Hb_010839_040 Hb_000462_100 Hb_000462_100 Hb_000589_280--Hb_000462_100 Hb_100786_010 Hb_100786_010 Hb_000589_280--Hb_100786_010 Hb_002835_030 Hb_002835_030 Hb_000589_280--Hb_002835_030 Hb_002758_020 Hb_002758_020 Hb_000589_280--Hb_002758_020 Hb_005464_040 Hb_005464_040 Hb_000589_280--Hb_005464_040 Hb_010839_040--Hb_000462_100 Hb_010839_040--Hb_002835_030 Hb_010839_040--Hb_002758_020 Hb_010839_040--Hb_100786_010 Hb_166232_010 Hb_166232_010 Hb_010839_040--Hb_166232_010 Hb_000462_100--Hb_002835_030 Hb_000462_100--Hb_002758_020 Hb_000462_100--Hb_100786_010 Hb_000462_100--Hb_005464_040 Hb_018709_010 Hb_018709_010 Hb_100786_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_100786_010--Hb_020141_020 Hb_100786_010--Hb_002835_030 Hb_002835_030--Hb_002758_020 Hb_002835_030--Hb_166232_010 Hb_002758_020--Hb_166232_010 Hb_000563_080 Hb_000563_080 Hb_002758_020--Hb_000563_080 Hb_005464_040--Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_005464_040--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_005464_040--Hb_000025_250 Hb_003188_020 Hb_003188_020 Hb_005464_040--Hb_003188_020 Hb_005464_040--Hb_166232_010 Hb_000446_100 Hb_000446_100 Hb_005464_040--Hb_000446_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.100732 0 0.0495136 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.08828 0

CAGE analysis