Hb_000589_320

Information

Type -
Description -
Location Contig589: 297521-298761
Sequence    

Annotation

kegg
ID pxb:103964172
description uncharacterized LOC103964172
nr
ID CBI31643.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HNV4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02030 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_320 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_106873_010 0.1436802179 - - -
3 Hb_001454_110 0.1833641569 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
4 Hb_032531_040 0.1851923981 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
5 Hb_005839_010 0.1944281987 - - 30S ribosomal protein s13 [Camellia sinensis]
6 Hb_042026_010 0.204998837 - - RNA binding protein, putative [Ricinus communis]
7 Hb_000962_010 0.220270883 - - -
8 Hb_000005_210 0.221624843 - - -
9 Hb_000041_170 0.221624843 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
10 Hb_000047_040 0.221624843 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
11 Hb_000072_260 0.221624843 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
12 Hb_000081_170 0.221624843 - - -
13 Hb_000088_250 0.221624843 - - -
14 Hb_000110_220 0.221624843 - - -
15 Hb_000110_360 0.221624843 - - -
16 Hb_000111_510 0.221624843 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000122_170 0.221624843 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
18 Hb_000122_180 0.221624843 - - -
19 Hb_000130_150 0.221624843 - - -
20 Hb_000139_020 0.221624843 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000589_320 Hb_000589_320 Hb_106873_010 Hb_106873_010 Hb_000589_320--Hb_106873_010 Hb_001454_110 Hb_001454_110 Hb_000589_320--Hb_001454_110 Hb_032531_040 Hb_032531_040 Hb_000589_320--Hb_032531_040 Hb_005839_010 Hb_005839_010 Hb_000589_320--Hb_005839_010 Hb_042026_010 Hb_042026_010 Hb_000589_320--Hb_042026_010 Hb_000962_010 Hb_000962_010 Hb_000589_320--Hb_000962_010 Hb_000671_040 Hb_000671_040 Hb_106873_010--Hb_000671_040 Hb_002204_040 Hb_002204_040 Hb_106873_010--Hb_002204_040 Hb_000291_130 Hb_000291_130 Hb_106873_010--Hb_000291_130 Hb_001579_040 Hb_001579_040 Hb_106873_010--Hb_001579_040 Hb_094132_010 Hb_094132_010 Hb_106873_010--Hb_094132_010 Hb_001454_110--Hb_032531_040 Hb_000805_300 Hb_000805_300 Hb_001454_110--Hb_000805_300 Hb_032531_050 Hb_032531_050 Hb_001454_110--Hb_032531_050 Hb_059952_010 Hb_059952_010 Hb_001454_110--Hb_059952_010 Hb_001454_110--Hb_001579_040 Hb_101151_030 Hb_101151_030 Hb_001454_110--Hb_101151_030 Hb_032531_040--Hb_032531_050 Hb_032531_040--Hb_000805_300 Hb_174005_010 Hb_174005_010 Hb_032531_040--Hb_174005_010 Hb_032531_040--Hb_001579_040 Hb_005839_010--Hb_002204_040 Hb_001385_080 Hb_001385_080 Hb_005839_010--Hb_001385_080 Hb_005839_010--Hb_000805_300 Hb_005839_010--Hb_001454_110 Hb_122567_020 Hb_122567_020 Hb_005839_010--Hb_122567_020 Hb_006692_050 Hb_006692_050 Hb_042026_010--Hb_006692_050 Hb_000005_210 Hb_000005_210 Hb_042026_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_042026_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_042026_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_042026_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_042026_010--Hb_000081_170 Hb_001385_050 Hb_001385_050 Hb_000962_010--Hb_001385_050 Hb_001762_070 Hb_001762_070 Hb_000962_010--Hb_001762_070 Hb_001125_020 Hb_001125_020 Hb_000962_010--Hb_001125_020 Hb_000004_140 Hb_000004_140 Hb_000962_010--Hb_000004_140 Hb_001206_070 Hb_001206_070 Hb_000962_010--Hb_001206_070 Hb_022593_060 Hb_022593_060 Hb_000962_010--Hb_022593_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.32585 0.494657 26.9226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis