Hb_000589_380

Information

Type -
Description -
Location Contig589: 331917-336641
Sequence    

Annotation

kegg
ID rcu:RCOM_1480330
description Phosphoribosylformylglycinamidine synthase, putative (EC:6.3.5.3)
nr
ID XP_002524208.1
description Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
swissprot
ID Q9M8D3
description Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=2 SV=3
trembl
ID B9SDY9
description Phosphoribosylformylglycinamidine synthase, putative OS=Ricinus communis GN=RCOM_1480330 PE=3 SV=1
Gene Ontology
ID GO:0004642
description probable phosphoribosylformylglycinamidine chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50107: 331561-333486 , PASA_asmbl_50108: 333510-336506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_380 0.0 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
2 Hb_001223_010 0.0899241184 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
3 Hb_001726_100 0.0936465015 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
4 Hb_000574_530 0.0939669334 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
5 Hb_099270_030 0.1025962125 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
6 Hb_015292_060 0.1027737706 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
7 Hb_001726_050 0.1031657804 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
8 Hb_000656_060 0.103267776 - - DNA binding protein, putative [Ricinus communis]
9 Hb_002609_080 0.1053551231 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
10 Hb_000183_030 0.1056964652 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
11 Hb_007546_030 0.109703034 - - transcription cofactor, putative [Ricinus communis]
12 Hb_002639_110 0.1124690015 - - hypothetical protein L484_011673 [Morus notabilis]
13 Hb_000484_010 0.1127117545 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
14 Hb_009486_090 0.1128669678 - - RNA binding protein, putative [Ricinus communis]
15 Hb_002908_040 0.1154858847 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
16 Hb_007472_090 0.1177361546 - - unnamed protein product [Coffea canephora]
17 Hb_001377_100 0.1186866342 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
18 Hb_001408_120 0.120460517 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_171554_040 0.1212340921 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
20 Hb_001124_050 0.1217008143 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]

Gene co-expression network

sample Hb_000589_380 Hb_000589_380 Hb_001223_010 Hb_001223_010 Hb_000589_380--Hb_001223_010 Hb_001726_100 Hb_001726_100 Hb_000589_380--Hb_001726_100 Hb_000574_530 Hb_000574_530 Hb_000589_380--Hb_000574_530 Hb_099270_030 Hb_099270_030 Hb_000589_380--Hb_099270_030 Hb_015292_060 Hb_015292_060 Hb_000589_380--Hb_015292_060 Hb_001726_050 Hb_001726_050 Hb_000589_380--Hb_001726_050 Hb_002908_040 Hb_002908_040 Hb_001223_010--Hb_002908_040 Hb_007472_090 Hb_007472_090 Hb_001223_010--Hb_007472_090 Hb_002639_110 Hb_002639_110 Hb_001223_010--Hb_002639_110 Hb_011485_060 Hb_011485_060 Hb_001223_010--Hb_011485_060 Hb_001223_010--Hb_001726_100 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_001726_100--Hb_001726_050 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020 Hb_007632_010 Hb_007632_010 Hb_000574_530--Hb_007632_010 Hb_001124_050 Hb_001124_050 Hb_000574_530--Hb_001124_050 Hb_171554_040 Hb_171554_040 Hb_000574_530--Hb_171554_040 Hb_006531_020 Hb_006531_020 Hb_000574_530--Hb_006531_020 Hb_009486_090 Hb_009486_090 Hb_000574_530--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_000574_530--Hb_002521_020 Hb_099270_030--Hb_001726_050 Hb_005348_010 Hb_005348_010 Hb_099270_030--Hb_005348_010 Hb_012098_070 Hb_012098_070 Hb_099270_030--Hb_012098_070 Hb_156279_010 Hb_156279_010 Hb_099270_030--Hb_156279_010 Hb_005488_170 Hb_005488_170 Hb_099270_030--Hb_005488_170 Hb_000714_040 Hb_000714_040 Hb_099270_030--Hb_000714_040 Hb_001377_100 Hb_001377_100 Hb_015292_060--Hb_001377_100 Hb_015292_060--Hb_009486_090 Hb_000890_070 Hb_000890_070 Hb_015292_060--Hb_000890_070 Hb_135572_010 Hb_135572_010 Hb_015292_060--Hb_135572_010 Hb_000022_160 Hb_000022_160 Hb_015292_060--Hb_000022_160 Hb_000922_030 Hb_000922_030 Hb_015292_060--Hb_000922_030 Hb_001726_050--Hb_000656_060 Hb_001726_050--Hb_005488_170 Hb_005186_040 Hb_005186_040 Hb_001726_050--Hb_005186_040 Hb_002909_120 Hb_002909_120 Hb_001726_050--Hb_002909_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91613 14.0353 4.14023 6.54081 5.36366 6.28021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68163 3.1162 8.6631 16.8352 22.4761

CAGE analysis