Hb_000589_400

Information

Type -
Description -
Location Contig589: 354899-355924
Sequence    

Annotation

kegg
ID rcu:RCOM_1480340
description ESC, putative
nr
ID XP_002524209.1
description ESC, putative [Ricinus communis]
swissprot
ID Q9M2S3
description AT-hook motif nuclear-localized protein 15 OS=Arabidopsis thaliana GN=AHL15 PE=2 SV=1
trembl
ID B9SDZ0
description ESC, putative OS=Ricinus communis GN=RCOM_1480340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_400 0.0 - - ESC, putative [Ricinus communis]
2 Hb_000640_300 0.1299526502 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
3 Hb_000703_240 0.178379561 - - -
4 Hb_054328_010 0.1819419386 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
5 Hb_000243_140 0.198646402 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
6 Hb_026698_010 0.2025935637 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
7 Hb_007451_020 0.205784353 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
8 Hb_001117_070 0.2104221513 - - 30S ribosomal protein S19, putative [Ricinus communis]
9 Hb_000050_100 0.2162306047 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
10 Hb_000050_090 0.2164984039 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
11 Hb_000116_230 0.2190426016 - - -
12 Hb_001529_050 0.2213226945 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
13 Hb_010407_070 0.2222040255 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
14 Hb_005568_080 0.2260928399 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004230_040 0.2297483458 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001269_690 0.2317284591 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000497_180 0.2320135551 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
18 Hb_028872_060 0.2320356053 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
19 Hb_000016_100 0.2344583839 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
20 Hb_004738_020 0.2350793874 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000589_400 Hb_000589_400 Hb_000640_300 Hb_000640_300 Hb_000589_400--Hb_000640_300 Hb_000703_240 Hb_000703_240 Hb_000589_400--Hb_000703_240 Hb_054328_010 Hb_054328_010 Hb_000589_400--Hb_054328_010 Hb_000243_140 Hb_000243_140 Hb_000589_400--Hb_000243_140 Hb_026698_010 Hb_026698_010 Hb_000589_400--Hb_026698_010 Hb_007451_020 Hb_007451_020 Hb_000589_400--Hb_007451_020 Hb_000640_300--Hb_000243_140 Hb_000640_300--Hb_007451_020 Hb_028872_060 Hb_028872_060 Hb_000640_300--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000640_300--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_000497_180 Hb_000497_180 Hb_000703_240--Hb_000497_180 Hb_000703_240--Hb_026698_010 Hb_000050_090 Hb_000050_090 Hb_000703_240--Hb_000050_090 Hb_000703_240--Hb_000640_300 Hb_005702_030 Hb_005702_030 Hb_000703_240--Hb_005702_030 Hb_054328_010--Hb_005702_030 Hb_054328_010--Hb_000703_240 Hb_054328_010--Hb_000640_300 Hb_001529_050 Hb_001529_050 Hb_054328_010--Hb_001529_050 Hb_000215_410 Hb_000215_410 Hb_054328_010--Hb_000215_410 Hb_009510_040 Hb_009510_040 Hb_000243_140--Hb_009510_040 Hb_001117_070 Hb_001117_070 Hb_000243_140--Hb_001117_070 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_005333_150 Hb_005333_150 Hb_000243_140--Hb_005333_150 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_010407_070 Hb_010407_070 Hb_026698_010--Hb_010407_070 Hb_004225_180 Hb_004225_180 Hb_026698_010--Hb_004225_180 Hb_000599_140 Hb_000599_140 Hb_026698_010--Hb_000599_140 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_004242_190 Hb_004242_190 Hb_007451_020--Hb_004242_190 Hb_005625_060 Hb_005625_060 Hb_007451_020--Hb_005625_060 Hb_007451_020--Hb_005333_150 Hb_004800_070 Hb_004800_070 Hb_007451_020--Hb_004800_070 Hb_007451_020--Hb_000243_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2021 18.7421 0.0481493 0.0168248 7.11971 5.42093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.65751 12.6632 7.68748 15.3922 0

CAGE analysis