Hb_000590_020

Information

Type -
Description -
Location Contig590: 14197-14643
Sequence    

Annotation

kegg
ID rcu:RCOM_0886230
description calmodulin binding protein, putative
nr
ID KDP29981.1
description hypothetical protein JCGZ_18748 [Jatropha curcas]
swissprot
ID P33082
description Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
trembl
ID A0A067K176
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18748 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_020 0.0 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
2 Hb_047040_010 0.0046430457 - - integrase [Gossypium herbaceum]
3 Hb_000139_440 0.0108277543 - - unnamed protein product [Coffea canephora]
4 Hb_022206_060 0.01294105 - - -
5 Hb_090826_010 0.0173190872 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
6 Hb_030928_010 0.0220522343 - - -
7 Hb_181535_010 0.0227495594 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_000351_030 0.0251233402 - - putative NBS-LRR type disease resistance protein [Prunus persica]
9 Hb_139388_010 0.0254396818 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
10 Hb_001110_020 0.0259692433 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
11 Hb_149358_010 0.0282179669 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_083493_050 0.0295996466 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
13 Hb_076908_010 0.0301220521 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_000174_190 0.0308462896 - - unnamed protein product [Coffea canephora]
15 Hb_168311_010 0.0335677575 - - -
16 Hb_004785_010 0.0349654169 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_125847_010 0.0907190885 - - -
18 Hb_000430_010 0.1067955777 - - -
19 Hb_012286_070 0.1114618763 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
20 Hb_000450_140 0.1115598803 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]

Gene co-expression network

sample Hb_000590_020 Hb_000590_020 Hb_047040_010 Hb_047040_010 Hb_000590_020--Hb_047040_010 Hb_000139_440 Hb_000139_440 Hb_000590_020--Hb_000139_440 Hb_022206_060 Hb_022206_060 Hb_000590_020--Hb_022206_060 Hb_090826_010 Hb_090826_010 Hb_000590_020--Hb_090826_010 Hb_030928_010 Hb_030928_010 Hb_000590_020--Hb_030928_010 Hb_181535_010 Hb_181535_010 Hb_000590_020--Hb_181535_010 Hb_047040_010--Hb_022206_060 Hb_047040_010--Hb_090826_010 Hb_047040_010--Hb_000139_440 Hb_047040_010--Hb_030928_010 Hb_047040_010--Hb_181535_010 Hb_168311_010 Hb_168311_010 Hb_000139_440--Hb_168311_010 Hb_000139_440--Hb_022206_060 Hb_000139_440--Hb_090826_010 Hb_000139_440--Hb_030928_010 Hb_022206_060--Hb_090826_010 Hb_022206_060--Hb_030928_010 Hb_022206_060--Hb_181535_010 Hb_000351_030 Hb_000351_030 Hb_022206_060--Hb_000351_030 Hb_139388_010 Hb_139388_010 Hb_022206_060--Hb_139388_010 Hb_090826_010--Hb_030928_010 Hb_090826_010--Hb_181535_010 Hb_090826_010--Hb_000351_030 Hb_090826_010--Hb_139388_010 Hb_001110_020 Hb_001110_020 Hb_090826_010--Hb_001110_020 Hb_030928_010--Hb_181535_010 Hb_030928_010--Hb_000351_030 Hb_030928_010--Hb_139388_010 Hb_030928_010--Hb_001110_020 Hb_149358_010 Hb_149358_010 Hb_030928_010--Hb_149358_010 Hb_181535_010--Hb_000351_030 Hb_181535_010--Hb_139388_010 Hb_181535_010--Hb_001110_020 Hb_181535_010--Hb_149358_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.84267 0.214796 0

CAGE analysis