Hb_000590_030

Information

Type -
Description -
Location Contig590: 15049-34962
Sequence    

Annotation

kegg
ID rcu:RCOM_0189850
description hypothetical protein
nr
ID XP_002531967.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T149
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0189850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50192: 33625-34841 , PASA_asmbl_50193: 33625-34871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000099_220 0.1959919641 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_011063_020 0.2240227877 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
4 Hb_024404_010 0.2288351697 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
5 Hb_000160_030 0.2314768824 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
6 Hb_002450_110 0.2376051262 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
7 Hb_003768_040 0.2482151422 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000857_050 0.2637605936 - - PREDICTED: protein YLS9 [Jatropha curcas]
9 Hb_104812_030 0.268653178 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
10 Hb_003688_170 0.2730220524 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
11 Hb_000116_300 0.2834770493 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_007547_040 0.285692655 - - Auxin response factor 9 [Aegilops tauschii]
13 Hb_000431_020 0.2921479258 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
14 Hb_064885_020 0.2946714425 - - -
15 Hb_000792_070 0.2957323949 - - Ataxin-3, putative [Ricinus communis]
16 Hb_004650_080 0.3009715198 - - -
17 Hb_104812_010 0.3016097215 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
18 Hb_000041_150 0.3018134209 - - Stachyose synthase precursor, putative [Ricinus communis]
19 Hb_127003_010 0.3043858647 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
20 Hb_006029_020 0.3068729447 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]

Gene co-expression network

sample Hb_000590_030 Hb_000590_030 Hb_000099_220 Hb_000099_220 Hb_000590_030--Hb_000099_220 Hb_011063_020 Hb_011063_020 Hb_000590_030--Hb_011063_020 Hb_024404_010 Hb_024404_010 Hb_000590_030--Hb_024404_010 Hb_000160_030 Hb_000160_030 Hb_000590_030--Hb_000160_030 Hb_002450_110 Hb_002450_110 Hb_000590_030--Hb_002450_110 Hb_003768_040 Hb_003768_040 Hb_000590_030--Hb_003768_040 Hb_000099_220--Hb_003768_040 Hb_000857_050 Hb_000857_050 Hb_000099_220--Hb_000857_050 Hb_064885_020 Hb_064885_020 Hb_000099_220--Hb_064885_020 Hb_000099_220--Hb_002450_110 Hb_104812_030 Hb_104812_030 Hb_000099_220--Hb_104812_030 Hb_003688_170 Hb_003688_170 Hb_011063_020--Hb_003688_170 Hb_011063_020--Hb_000160_030 Hb_011063_020--Hb_024404_010 Hb_000251_090 Hb_000251_090 Hb_011063_020--Hb_000251_090 Hb_002139_010 Hb_002139_010 Hb_011063_020--Hb_002139_010 Hb_104812_010 Hb_104812_010 Hb_024404_010--Hb_104812_010 Hb_007333_030 Hb_007333_030 Hb_024404_010--Hb_007333_030 Hb_135611_010 Hb_135611_010 Hb_024404_010--Hb_135611_010 Hb_148909_010 Hb_148909_010 Hb_024404_010--Hb_148909_010 Hb_002255_070 Hb_002255_070 Hb_024404_010--Hb_002255_070 Hb_000187_090 Hb_000187_090 Hb_024404_010--Hb_000187_090 Hb_000160_030--Hb_003688_170 Hb_011639_060 Hb_011639_060 Hb_000160_030--Hb_011639_060 Hb_000392_390 Hb_000392_390 Hb_000160_030--Hb_000392_390 Hb_000160_030--Hb_002139_010 Hb_000544_040 Hb_000544_040 Hb_002450_110--Hb_000544_040 Hb_001916_130 Hb_001916_130 Hb_002450_110--Hb_001916_130 Hb_095471_010 Hb_095471_010 Hb_002450_110--Hb_095471_010 Hb_007547_040 Hb_007547_040 Hb_002450_110--Hb_007547_040 Hb_000313_320 Hb_000313_320 Hb_002450_110--Hb_000313_320 Hb_098315_110 Hb_098315_110 Hb_003768_040--Hb_098315_110 Hb_002311_250 Hb_002311_250 Hb_003768_040--Hb_002311_250 Hb_001946_360 Hb_001946_360 Hb_003768_040--Hb_001946_360 Hb_130177_010 Hb_130177_010 Hb_003768_040--Hb_130177_010 Hb_000431_020 Hb_000431_020 Hb_003768_040--Hb_000431_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.5749 9.92118 11.7108 30.0408 121.894 3.60666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09206 3.63796 88.1229 18.9804 7.21528

CAGE analysis