Hb_000590_050

Information

Type -
Description -
Location Contig590: 65354-71080
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21780g
description POPTRDRAFT_227650; hypothetical protein
nr
ID XP_012072942.1
description PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
swissprot
ID Q9C5S1
description Protein-tyrosine-phosphatase MKP1 OS=Arabidopsis thaliana GN=MKP1 PE=1 SV=1
trembl
ID A0A067KMP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08408 PE=4 SV=1
Gene Ontology
ID GO:0005737
description protein-tyrosine-phosphatase mkp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50195: 66343-69167 , PASA_asmbl_50196: 70714-71697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_050 0.0 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
2 Hb_000327_270 0.0433695419 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
3 Hb_020378_030 0.0477911507 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
4 Hb_000890_060 0.0517917006 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
5 Hb_009270_020 0.0606128452 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
6 Hb_000592_030 0.0613855126 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
7 Hb_001004_060 0.0616587783 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
8 Hb_105328_020 0.0623430172 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
9 Hb_004586_220 0.0631047727 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
10 Hb_001814_030 0.0641363759 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
11 Hb_000537_050 0.0642732465 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
12 Hb_002732_040 0.0662058029 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
13 Hb_000008_290 0.0667540641 - - PREDICTED: protein SAND [Jatropha curcas]
14 Hb_003168_110 0.0681135172 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
15 Hb_007747_040 0.0681940049 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
16 Hb_000107_490 0.069069613 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_000613_050 0.0691139661 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
18 Hb_003680_120 0.069684204 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
19 Hb_001329_140 0.0699993092 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
20 Hb_003504_030 0.0700957223 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000590_050 Hb_000590_050 Hb_000327_270 Hb_000327_270 Hb_000590_050--Hb_000327_270 Hb_020378_030 Hb_020378_030 Hb_000590_050--Hb_020378_030 Hb_000890_060 Hb_000890_060 Hb_000590_050--Hb_000890_060 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000327_270--Hb_000890_060 Hb_004586_220 Hb_004586_220 Hb_020378_030--Hb_004586_220 Hb_000441_220 Hb_000441_220 Hb_020378_030--Hb_000441_220 Hb_001814_030 Hb_001814_030 Hb_020378_030--Hb_001814_030 Hb_020378_030--Hb_000592_030 Hb_020378_030--Hb_002732_040 Hb_000008_290 Hb_000008_290 Hb_000890_060--Hb_000008_290 Hb_000890_060--Hb_001814_030 Hb_007426_110 Hb_007426_110 Hb_000890_060--Hb_007426_110 Hb_000890_060--Hb_020378_030 Hb_009270_020--Hb_001814_030 Hb_000579_230 Hb_000579_230 Hb_009270_020--Hb_000579_230 Hb_000207_180 Hb_000207_180 Hb_009270_020--Hb_000207_180 Hb_009270_020--Hb_007426_110 Hb_000441_120 Hb_000441_120 Hb_009270_020--Hb_000441_120 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.0669 7.13623 4.60418 5.96152 4.94285 7.82044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96029 4.26606 6.13769 7.41958 6.79346

CAGE analysis