Hb_000590_090

Information

Type -
Description -
Location Contig590: 130247-142607
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04930g
description POPTRDRAFT_419822; hypothetical protein
nr
ID XP_012072934.1
description PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FY46
description Sulfate transporter 4.1, chloroplastic OS=Arabidopsis thaliana GN=SULTR4;1 PE=1 SV=1
trembl
ID A0A067LC61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06587 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sulfate transporter chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50201: 135886-142545
cDNA
(Sanger)
(ID:Location)		 044_A23.ab1: 141966-142545

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_090 0.0 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_005389_140 0.0825502827 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
3 Hb_001386_130 0.0845594174 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
4 Hb_000680_150 0.0926565002 - - PREDICTED: protein STU1-like [Jatropha curcas]
5 Hb_000714_020 0.0973655038 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
6 Hb_001454_390 0.0979368819 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
7 Hb_005714_040 0.0991521684 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004813_010 0.101667904 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_178968_150 0.1048391213 - - zinc finger protein, putative [Ricinus communis]
10 Hb_002619_010 0.1064577936 - - -
11 Hb_001493_100 0.1130357209 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
12 Hb_001514_020 0.1136884724 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
13 Hb_000062_230 0.1138630484 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
14 Hb_000038_130 0.1144023244 - - -
15 Hb_004374_010 0.1174214402 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
16 Hb_003788_040 0.1203096784 - - -
17 Hb_000183_070 0.121564019 - - -
18 Hb_116701_020 0.1252679727 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000117_040 0.1260041776 - - 30S ribosomal protein S6A [Hevea brasiliensis]
20 Hb_002783_230 0.126914803 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_000590_090 Hb_000590_090 Hb_005389_140 Hb_005389_140 Hb_000590_090--Hb_005389_140 Hb_001386_130 Hb_001386_130 Hb_000590_090--Hb_001386_130 Hb_000680_150 Hb_000680_150 Hb_000590_090--Hb_000680_150 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_001454_390 Hb_001454_390 Hb_000590_090--Hb_001454_390 Hb_005714_040 Hb_005714_040 Hb_000590_090--Hb_005714_040 Hb_005389_140--Hb_005714_040 Hb_000062_230 Hb_000062_230 Hb_005389_140--Hb_000062_230 Hb_004813_010 Hb_004813_010 Hb_005389_140--Hb_004813_010 Hb_000183_070 Hb_000183_070 Hb_005389_140--Hb_000183_070 Hb_004374_010 Hb_004374_010 Hb_005389_140--Hb_004374_010 Hb_001386_130--Hb_000680_150 Hb_001386_130--Hb_004813_010 Hb_001514_020 Hb_001514_020 Hb_001386_130--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_001386_130--Hb_001493_100 Hb_116701_020 Hb_116701_020 Hb_001386_130--Hb_116701_020 Hb_007451_030 Hb_007451_030 Hb_000680_150--Hb_007451_030 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_000680_150--Hb_001514_020 Hb_000680_150--Hb_001493_100 Hb_011609_030 Hb_011609_030 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_000714_020--Hb_001493_100 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_000714_020--Hb_004374_010 Hb_001780_060 Hb_001780_060 Hb_001454_390--Hb_001780_060 Hb_170116_010 Hb_170116_010 Hb_001454_390--Hb_170116_010 Hb_002875_090 Hb_002875_090 Hb_001454_390--Hb_002875_090 Hb_003253_010 Hb_003253_010 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130 Hb_005714_040--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_005714_040--Hb_005015_010 Hb_006452_190 Hb_006452_190 Hb_005714_040--Hb_006452_190 Hb_000188_190 Hb_000188_190 Hb_005714_040--Hb_000188_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
155.41 15.0031 14.7272 4.56464 88.4215 58.0746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.4394 58.0004 36.3666 9.72005 5.5798

CAGE analysis