Hb_000590_110

Information

Type -
Description -
Location Contig590: 150097-151824
Sequence    

Annotation

kegg
ID rcu:RCOM_1103690
description hypothetical protein
nr
ID XP_002523034.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAL5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50203: 150420-151933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000139_360 0.0930367944 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
3 Hb_002042_210 0.10175563 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
4 Hb_044478_010 0.102053957 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
5 Hb_000049_100 0.1045061383 - - Photosystem II reaction center W protein, putative [Ricinus communis]
6 Hb_000369_110 0.1052333947 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_008195_090 0.1092176101 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000190_230 0.1116450276 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
9 Hb_001682_020 0.113106544 - - PREDICTED: uncharacterized protein LOC105628366 [Jatropha curcas]
10 Hb_131466_010 0.1144274461 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
11 Hb_006970_030 0.1151838182 - - synaptotagmin, putative [Ricinus communis]
12 Hb_086300_010 0.1153381479 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_002121_050 0.1154446687 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
14 Hb_008112_020 0.1154810297 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
15 Hb_153258_040 0.1163411881 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
16 Hb_002003_130 0.1174523551 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
17 Hb_033187_010 0.1178230747 - - epoxide hydrolase, putative [Ricinus communis]
18 Hb_003632_020 0.1181530912 - - calcium-binding family protein [Populus trichocarpa]
19 Hb_029991_010 0.118693735 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
20 Hb_010326_020 0.1196993094 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000590_110 Hb_000590_110 Hb_000139_360 Hb_000139_360 Hb_000590_110--Hb_000139_360 Hb_002042_210 Hb_002042_210 Hb_000590_110--Hb_002042_210 Hb_044478_010 Hb_044478_010 Hb_000590_110--Hb_044478_010 Hb_000049_100 Hb_000049_100 Hb_000590_110--Hb_000049_100 Hb_000369_110 Hb_000369_110 Hb_000590_110--Hb_000369_110 Hb_008195_090 Hb_008195_090 Hb_000590_110--Hb_008195_090 Hb_000696_060 Hb_000696_060 Hb_000139_360--Hb_000696_060 Hb_000139_360--Hb_008195_090 Hb_000139_360--Hb_044478_010 Hb_172426_070 Hb_172426_070 Hb_000139_360--Hb_172426_070 Hb_029991_010 Hb_029991_010 Hb_000139_360--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_000139_360--Hb_002387_010 Hb_131466_010 Hb_131466_010 Hb_002042_210--Hb_131466_010 Hb_002042_210--Hb_044478_010 Hb_006291_050 Hb_006291_050 Hb_002042_210--Hb_006291_050 Hb_002805_280 Hb_002805_280 Hb_002042_210--Hb_002805_280 Hb_003033_020 Hb_003033_020 Hb_002042_210--Hb_003033_020 Hb_005111_040 Hb_005111_040 Hb_002042_210--Hb_005111_040 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_044478_010--Hb_131466_010 Hb_001946_120 Hb_001946_120 Hb_044478_010--Hb_001946_120 Hb_044478_010--Hb_005111_040 Hb_001999_230 Hb_001999_230 Hb_044478_010--Hb_001999_230 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000254_130 Hb_000254_130 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_002375_030 Hb_002375_030 Hb_000049_100--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_000049_100--Hb_010326_020 Hb_007537_040 Hb_007537_040 Hb_000369_110--Hb_007537_040 Hb_003025_160 Hb_003025_160 Hb_000369_110--Hb_003025_160 Hb_002121_050 Hb_002121_050 Hb_000369_110--Hb_002121_050 Hb_008225_050 Hb_008225_050 Hb_000369_110--Hb_008225_050 Hb_002752_020 Hb_002752_020 Hb_000369_110--Hb_002752_020 Hb_000369_110--Hb_000254_130 Hb_008195_090--Hb_002805_280 Hb_003151_020 Hb_003151_020 Hb_008195_090--Hb_003151_020 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_008195_090--Hb_029991_010 Hb_008195_090--Hb_002387_010 Hb_033681_030 Hb_033681_030 Hb_008195_090--Hb_033681_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0992616 0.189455 5.47943 4.65433 0.114342 0.13481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0551667 0.0995175 0.35764 11.5931

CAGE analysis