Hb_000592_020

Information

Type -
Description -
Location Contig592: 52494-66871
Sequence    

Annotation

kegg
ID tcc:TCM_012715
description Tyrosine kinase family protein isoform 1
nr
ID XP_012068442.1
description PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067KY58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03632 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase edr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50280: 53014-66919 , PASA_asmbl_50281: 55074-55403 , PASA_asmbl_50282: 65961-66163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_020 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
2 Hb_020805_130 0.0909675781 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_002027_040 0.0951006038 - - synapse-associated protein, putative [Ricinus communis]
4 Hb_000567_120 0.1005614368 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
5 Hb_004607_030 0.1062015657 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
6 Hb_000120_960 0.1068063796 - - isocitrate dehydrogenase, putative [Ricinus communis]
7 Hb_000108_070 0.1080520266 - - alpha-tubulin 1 [Hevea brasiliensis]
8 Hb_004705_120 0.1088325449 - - ATP binding protein, putative [Ricinus communis]
9 Hb_003582_040 0.1113903921 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
10 Hb_001959_190 0.1133737579 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
11 Hb_000406_120 0.1137236566 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
12 Hb_010407_180 0.1141892271 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
13 Hb_008616_070 0.1143310826 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
14 Hb_006647_020 0.1144728363 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
15 Hb_000147_040 0.1154101782 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
16 Hb_003647_060 0.1157578433 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
17 Hb_001314_020 0.1160295216 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
18 Hb_000646_050 0.116165008 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
19 Hb_001507_040 0.116440902 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001892_020 0.1164999265 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_000592_020 Hb_000592_020 Hb_020805_130 Hb_020805_130 Hb_000592_020--Hb_020805_130 Hb_002027_040 Hb_002027_040 Hb_000592_020--Hb_002027_040 Hb_000567_120 Hb_000567_120 Hb_000592_020--Hb_000567_120 Hb_004607_030 Hb_004607_030 Hb_000592_020--Hb_004607_030 Hb_000120_960 Hb_000120_960 Hb_000592_020--Hb_000120_960 Hb_000108_070 Hb_000108_070 Hb_000592_020--Hb_000108_070 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_001507_040 Hb_001507_040 Hb_020805_130--Hb_001507_040 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_020805_130--Hb_002027_040 Hb_005162_070 Hb_005162_070 Hb_002027_040--Hb_005162_070 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_000260_570 Hb_000260_570 Hb_002027_040--Hb_000260_570 Hb_008695_100 Hb_008695_100 Hb_000567_120--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_010608_050 Hb_010608_050 Hb_004607_030--Hb_010608_050 Hb_004607_030--Hb_008695_100 Hb_025557_030 Hb_025557_030 Hb_004607_030--Hb_025557_030 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_001014_040 Hb_001014_040 Hb_000108_070--Hb_001014_040 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_000130_050 Hb_000130_050 Hb_000108_070--Hb_000130_050 Hb_000108_070--Hb_002660_070 Hb_001811_030 Hb_001811_030 Hb_000108_070--Hb_001811_030 Hb_000108_070--Hb_000120_960
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.97318 7.80087 4.41207 7.31643 3.38724 5.42191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1836 9.71552 21.0906 5.80021 5.02303

CAGE analysis