Hb_000592_080

Information

Type -
Description -
Location Contig592: 123729-132918
Sequence    

Annotation

kegg
ID rcu:RCOM_1679040
description thymidylate kinase, putative (EC:2.7.4.9)
nr
ID XP_012071017.1
description PREDICTED: thymidylate kinase [Jatropha curcas]
swissprot
ID Q54GN2
description Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1
trembl
ID B9RBN0
description Thymidylate kinase, putative OS=Ricinus communis GN=RCOM_1679040 PE=3 SV=1
Gene Ontology
ID GO:0005654
description thymidylate kinase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50296: 126465-132840 , PASA_asmbl_50297: 131226-131413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_080 0.0 - - PREDICTED: thymidylate kinase [Jatropha curcas]
2 Hb_008864_110 0.0845342668 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_002400_470 0.0871870872 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_001348_050 0.0875562642 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001047_030 0.0885201974 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
6 Hb_000976_320 0.0928033193 - - UPF0061 protein azo1574 [Morus notabilis]
7 Hb_000710_020 0.0935925562 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
8 Hb_140171_010 0.0959829793 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
9 Hb_001310_110 0.0981433369 - - unnamed protein product [Coffea canephora]
10 Hb_000236_380 0.100210537 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
11 Hb_001752_030 0.1018209846 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
12 Hb_165350_010 0.101935293 - - unnamed protein product [Triticum aestivum]
13 Hb_002508_020 0.1031638354 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
14 Hb_002255_050 0.104118849 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000640_220 0.1043646883 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
16 Hb_000173_510 0.1046878383 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
17 Hb_001347_040 0.1048511407 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
18 Hb_000933_020 0.1050381682 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000208_210 0.1050627105 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
20 Hb_003018_060 0.1064336099 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]

Gene co-expression network

sample Hb_000592_080 Hb_000592_080 Hb_008864_110 Hb_008864_110 Hb_000592_080--Hb_008864_110 Hb_002400_470 Hb_002400_470 Hb_000592_080--Hb_002400_470 Hb_001348_050 Hb_001348_050 Hb_000592_080--Hb_001348_050 Hb_001047_030 Hb_001047_030 Hb_000592_080--Hb_001047_030 Hb_000976_320 Hb_000976_320 Hb_000592_080--Hb_000976_320 Hb_000710_020 Hb_000710_020 Hb_000592_080--Hb_000710_020 Hb_003605_130 Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_000123_090 Hb_000123_090 Hb_008864_110--Hb_000123_090 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_002400_470--Hb_001047_030 Hb_057878_010 Hb_057878_010 Hb_002400_470--Hb_057878_010 Hb_000236_380 Hb_000236_380 Hb_002400_470--Hb_000236_380 Hb_002400_470--Hb_000123_090 Hb_005532_050 Hb_005532_050 Hb_002400_470--Hb_005532_050 Hb_001348_050--Hb_000236_380 Hb_014361_100 Hb_014361_100 Hb_001348_050--Hb_014361_100 Hb_140171_010 Hb_140171_010 Hb_001348_050--Hb_140171_010 Hb_000329_390 Hb_000329_390 Hb_001348_050--Hb_000329_390 Hb_007592_030 Hb_007592_030 Hb_001348_050--Hb_007592_030 Hb_001301_200 Hb_001301_200 Hb_001047_030--Hb_001301_200 Hb_007904_200 Hb_007904_200 Hb_001047_030--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_001047_030--Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_001047_030--Hb_010457_030 Hb_106552_050 Hb_106552_050 Hb_000976_320--Hb_106552_050 Hb_011942_080 Hb_011942_080 Hb_000976_320--Hb_011942_080 Hb_000976_320--Hb_008864_110 Hb_000768_110 Hb_000768_110 Hb_000976_320--Hb_000768_110 Hb_000322_100 Hb_000322_100 Hb_000976_320--Hb_000322_100 Hb_001677_210 Hb_001677_210 Hb_000976_320--Hb_001677_210 Hb_001439_150 Hb_001439_150 Hb_000710_020--Hb_001439_150 Hb_006185_050 Hb_006185_050 Hb_000710_020--Hb_006185_050 Hb_003464_050 Hb_003464_050 Hb_000710_020--Hb_003464_050 Hb_001305_010 Hb_001305_010 Hb_000710_020--Hb_001305_010 Hb_003175_010 Hb_003175_010 Hb_000710_020--Hb_003175_010 Hb_007951_060 Hb_007951_060 Hb_000710_020--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.0073 28.8015 38.8137 37.166 76.6731 79.5185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9842 31.0246 45.3036 23.321 13.6531

CAGE analysis