Hb_000594_050

Information

Type -
Description -
Location Contig594: 103659-107760
Sequence    

Annotation

kegg
ID rcu:RCOM_0353900
description hypothetical protein
nr
ID XP_012082038.1
description PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
swissprot
ID P48582
description Vacuolar-sorting protein BRO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRO1 PE=1 SV=2
trembl
ID A0A067JZR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18293 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50327: 103723-107589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_050 0.0 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
2 Hb_000181_130 0.0694773539 - - ATP binding protein, putative [Ricinus communis]
3 Hb_003750_050 0.072742461 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
4 Hb_000107_230 0.0737868802 - - unknown [Medicago truncatula]
5 Hb_006588_170 0.0748835495 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
6 Hb_002811_180 0.0802138116 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002641_060 0.0832820575 - - prefoldin subunit, putative [Ricinus communis]
8 Hb_082821_010 0.0848283452 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
9 Hb_000621_010 0.0848539642 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
10 Hb_001633_130 0.0858795183 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
11 Hb_004627_040 0.0867594566 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
12 Hb_000453_160 0.0868414298 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
13 Hb_001135_060 0.0892924115 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
14 Hb_004990_010 0.0893856823 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
15 Hb_008616_050 0.0898670558 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
16 Hb_054865_150 0.090894455 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
17 Hb_011037_030 0.0926901917 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
18 Hb_003671_010 0.0929716879 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
19 Hb_008847_030 0.0933153504 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
20 Hb_000720_040 0.0941712534 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000594_050 Hb_000594_050 Hb_000181_130 Hb_000181_130 Hb_000594_050--Hb_000181_130 Hb_003750_050 Hb_003750_050 Hb_000594_050--Hb_003750_050 Hb_000107_230 Hb_000107_230 Hb_000594_050--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_000594_050--Hb_006588_170 Hb_002811_180 Hb_002811_180 Hb_000594_050--Hb_002811_180 Hb_002641_060 Hb_002641_060 Hb_000594_050--Hb_002641_060 Hb_009328_020 Hb_009328_020 Hb_000181_130--Hb_009328_020 Hb_000621_010 Hb_000621_010 Hb_000181_130--Hb_000621_010 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_065500_060 Hb_065500_060 Hb_000181_130--Hb_065500_060 Hb_008847_030 Hb_008847_030 Hb_000181_130--Hb_008847_030 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_000120_670 Hb_000120_670 Hb_003750_050--Hb_000120_670 Hb_001279_150 Hb_001279_150 Hb_003750_050--Hb_001279_150 Hb_003750_050--Hb_002811_180 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_003750_050--Hb_054865_150 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_000107_230--Hb_006588_170 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170 Hb_105328_020 Hb_105328_020 Hb_006588_170--Hb_105328_020 Hb_013399_020 Hb_013399_020 Hb_006588_170--Hb_013399_020 Hb_000170_090 Hb_000170_090 Hb_006588_170--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_006588_170--Hb_000345_380 Hb_001860_030 Hb_001860_030 Hb_006588_170--Hb_001860_030 Hb_000260_330 Hb_000260_330 Hb_002811_180--Hb_000260_330 Hb_002811_180--Hb_000621_010 Hb_002811_180--Hb_008847_030 Hb_000392_430 Hb_000392_430 Hb_002811_180--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_002811_180--Hb_000111_320 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00904 8.40845 14.093 19.4691 13.3965 21.2763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.984 15.1716 11.5233 11.0685 10.8546

CAGE analysis