Hb_000594_060

Information

Type -
Description -
Location Contig594: 112119-117624
Sequence    

Annotation

kegg
ID rcu:RCOM_0353910
description hypothetical protein
nr
ID XP_012082037.1
description PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18292 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50329: 117622-117814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_060 0.0 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
2 Hb_011188_010 0.0768261307 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
3 Hb_000487_370 0.0835849961 - - -
4 Hb_002432_050 0.0899739483 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
5 Hb_001663_130 0.0915109321 - - acyl-CoA thioesterase, putative [Ricinus communis]
6 Hb_003175_070 0.0947491063 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
7 Hb_000414_080 0.0961824261 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
8 Hb_013968_010 0.1003609169 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
9 Hb_000230_530 0.1015242789 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000300_560 0.1017062974 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
11 Hb_000510_190 0.1032703884 - - glutathione reductase [Hevea brasiliensis]
12 Hb_002010_090 0.104442862 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
13 Hb_000260_160 0.1055756664 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
14 Hb_001059_060 0.1065189428 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
15 Hb_002447_050 0.1066118392 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_006816_010 0.1069513859 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004052_110 0.1077371957 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
18 Hb_009078_020 0.1089926054 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
19 Hb_003020_250 0.1094602495 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
20 Hb_009296_020 0.1133570243 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000594_060 Hb_000594_060 Hb_011188_010 Hb_011188_010 Hb_000594_060--Hb_011188_010 Hb_000487_370 Hb_000487_370 Hb_000594_060--Hb_000487_370 Hb_002432_050 Hb_002432_050 Hb_000594_060--Hb_002432_050 Hb_001663_130 Hb_001663_130 Hb_000594_060--Hb_001663_130 Hb_003175_070 Hb_003175_070 Hb_000594_060--Hb_003175_070 Hb_000414_080 Hb_000414_080 Hb_000594_060--Hb_000414_080 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_000487_370--Hb_000414_080 Hb_000510_190 Hb_000510_190 Hb_000487_370--Hb_000510_190 Hb_004052_110 Hb_004052_110 Hb_000487_370--Hb_004052_110 Hb_000487_370--Hb_001059_060 Hb_002249_080 Hb_002249_080 Hb_000487_370--Hb_002249_080 Hb_005527_060 Hb_005527_060 Hb_002432_050--Hb_005527_060 Hb_002432_050--Hb_001663_130 Hb_013968_010 Hb_013968_010 Hb_002432_050--Hb_013968_010 Hb_002432_050--Hb_011188_010 Hb_001117_080 Hb_001117_080 Hb_002432_050--Hb_001117_080 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_001663_130--Hb_011188_010 Hb_003175_070--Hb_000414_080 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_003175_070--Hb_007594_080 Hb_002675_080 Hb_002675_080 Hb_003175_070--Hb_002675_080 Hb_004545_080 Hb_004545_080 Hb_003175_070--Hb_004545_080 Hb_000414_080--Hb_000510_190 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.611309 2.52376 6.18467 3.6008 0.893919 1.04305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.699878 0.825686 0.362113 2.45017 5.1519

CAGE analysis