Hb_000594_140

Information

Type -
Description -
Location Contig594: 188331-189773
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13960g
description POPTRDRAFT_658937; hypothetical protein
nr
ID XP_012082028.1
description PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
swissprot
ID Q0V7R1
description Probable galacturonosyltransferase-like 3 OS=Arabidopsis thaliana GN=GATL3 PE=2 SV=1
trembl
ID A0A067KC09
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_18285 PE=3 SV=1
Gene Ontology
ID GO:0047262
description probable galacturonosyltransferase-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_140 0.0 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
2 Hb_002635_020 0.122243039 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
3 Hb_008175_050 0.1302877137 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
4 Hb_003656_090 0.1311072905 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
5 Hb_002027_430 0.132585062 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
6 Hb_144449_010 0.1338946459 - - Potassium transporter, putative [Ricinus communis]
7 Hb_000230_360 0.1339104673 - - PREDICTED: BI1-like protein [Jatropha curcas]
8 Hb_003607_140 0.1348290399 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
9 Hb_000162_200 0.1375258296 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
10 Hb_001440_010 0.139603503 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
11 Hb_001894_010 0.1405604649 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
12 Hb_000834_220 0.1419936025 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
13 Hb_001135_010 0.1436001291 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
14 Hb_152980_020 0.1441022044 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
15 Hb_001439_010 0.1443025391 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
16 Hb_000318_010 0.1463621526 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
17 Hb_000416_090 0.1469892604 - - Aquaporin NIP1.1, putative [Ricinus communis]
18 Hb_005144_060 0.1502361943 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
19 Hb_010557_020 0.1521202507 - - Mlo protein [Hevea brasiliensis]
20 Hb_006469_090 0.1521665325 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]

Gene co-expression network

sample Hb_000594_140 Hb_000594_140 Hb_002635_020 Hb_002635_020 Hb_000594_140--Hb_002635_020 Hb_008175_050 Hb_008175_050 Hb_000594_140--Hb_008175_050 Hb_003656_090 Hb_003656_090 Hb_000594_140--Hb_003656_090 Hb_002027_430 Hb_002027_430 Hb_000594_140--Hb_002027_430 Hb_144449_010 Hb_144449_010 Hb_000594_140--Hb_144449_010 Hb_000230_360 Hb_000230_360 Hb_000594_140--Hb_000230_360 Hb_002601_140 Hb_002601_140 Hb_002635_020--Hb_002601_140 Hb_000922_160 Hb_000922_160 Hb_002635_020--Hb_000922_160 Hb_002078_320 Hb_002078_320 Hb_002635_020--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_002635_020--Hb_000162_200 Hb_004162_320 Hb_004162_320 Hb_002635_020--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_002635_020--Hb_003506_010 Hb_008175_050--Hb_003656_090 Hb_001138_070 Hb_001138_070 Hb_008175_050--Hb_001138_070 Hb_007017_100 Hb_007017_100 Hb_008175_050--Hb_007017_100 Hb_005731_070 Hb_005731_070 Hb_008175_050--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_008175_050--Hb_007386_030 Hb_015001_030 Hb_015001_030 Hb_008175_050--Hb_015001_030 Hb_001440_010 Hb_001440_010 Hb_003656_090--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_003656_090--Hb_000834_220 Hb_003656_090--Hb_001138_070 Hb_003656_090--Hb_015001_030 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160 Hb_001936_180 Hb_001936_180 Hb_002027_430--Hb_001936_180 Hb_116647_010 Hb_116647_010 Hb_002027_430--Hb_116647_010 Hb_002027_430--Hb_000834_220 Hb_001597_030 Hb_001597_030 Hb_002027_430--Hb_001597_030 Hb_002027_430--Hb_001440_010 Hb_003606_050 Hb_003606_050 Hb_002027_430--Hb_003606_050 Hb_000473_100 Hb_000473_100 Hb_144449_010--Hb_000473_100 Hb_003266_010 Hb_003266_010 Hb_144449_010--Hb_003266_010 Hb_010557_020 Hb_010557_020 Hb_144449_010--Hb_010557_020 Hb_004607_160 Hb_004607_160 Hb_144449_010--Hb_004607_160 Hb_152980_020 Hb_152980_020 Hb_144449_010--Hb_152980_020 Hb_000856_200 Hb_000856_200 Hb_144449_010--Hb_000856_200 Hb_000061_310 Hb_000061_310 Hb_000230_360--Hb_000061_310 Hb_002301_370 Hb_002301_370 Hb_000230_360--Hb_002301_370 Hb_031385_010 Hb_031385_010 Hb_000230_360--Hb_031385_010 Hb_000230_360--Hb_001440_010 Hb_000230_360--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_000230_360--Hb_001019_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1737 2.7988 8.19734 10.2583 0.218397 0.126438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.223189 0.0584916 0 6.31447 9.2048

CAGE analysis