Hb_000594_160

Information

Type transcription factor
Description TF Family: NAC
Location Contig594: 210574-216651
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11550g
description POPTRDRAFT_564490; hypothetical protein
nr
ID XP_012082025.1
description PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
swissprot
ID Q6NQK2
description NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1
trembl
ID R4N7T7
description NAC transcription factor 092 OS=Jatropha curcas GN=JCGZ_18283 PE=4 SV=1
Gene Ontology
ID GO:0009987
description nac domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50346: 211039-211976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_160 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
2 Hb_005766_010 0.0499738377 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_007386_030 0.079893463 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
4 Hb_001040_200 0.0885180403 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_005731_070 0.0967559671 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004079_100 0.103181381 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
7 Hb_000866_190 0.1057500834 - - transcription factor, putative [Ricinus communis]
8 Hb_001141_160 0.1077970754 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
9 Hb_022250_160 0.1084533283 - - respiratory burst oxidase A [Manihot esculenta]
10 Hb_003656_090 0.1087195165 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
11 Hb_059000_010 0.1100009525 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
12 Hb_000096_210 0.1126880207 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
13 Hb_003847_050 0.1127881987 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
14 Hb_000017_320 0.1130735631 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
15 Hb_001114_120 0.1136652232 - - protein with unknown function [Ricinus communis]
16 Hb_019026_050 0.1143490058 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008175_050 0.1149608714 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
18 Hb_014250_010 0.1167540387 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
19 Hb_007875_020 0.1216338321 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
20 Hb_001189_100 0.1217234472 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000594_160 Hb_000594_160 Hb_005766_010 Hb_005766_010 Hb_000594_160--Hb_005766_010 Hb_007386_030 Hb_007386_030 Hb_000594_160--Hb_007386_030 Hb_001040_200 Hb_001040_200 Hb_000594_160--Hb_001040_200 Hb_005731_070 Hb_005731_070 Hb_000594_160--Hb_005731_070 Hb_004079_100 Hb_004079_100 Hb_000594_160--Hb_004079_100 Hb_000866_190 Hb_000866_190 Hb_000594_160--Hb_000866_190 Hb_014250_010 Hb_014250_010 Hb_005766_010--Hb_014250_010 Hb_005766_010--Hb_000866_190 Hb_000096_210 Hb_000096_210 Hb_005766_010--Hb_000096_210 Hb_000017_320 Hb_000017_320 Hb_005766_010--Hb_000017_320 Hb_005766_010--Hb_005731_070 Hb_007875_020 Hb_007875_020 Hb_007386_030--Hb_007875_020 Hb_007386_030--Hb_005731_070 Hb_065521_010 Hb_065521_010 Hb_007386_030--Hb_065521_010 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080 Hb_022250_160 Hb_022250_160 Hb_001040_200--Hb_022250_160 Hb_004282_010 Hb_004282_010 Hb_001040_200--Hb_004282_010 Hb_001040_200--Hb_004079_100 Hb_002448_020 Hb_002448_020 Hb_001040_200--Hb_002448_020 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_000714_060 Hb_000714_060 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_009554_030 Hb_009554_030 Hb_000866_190--Hb_009554_030 Hb_006469_090 Hb_006469_090 Hb_000866_190--Hb_006469_090 Hb_000866_190--Hb_014250_010 Hb_015306_010 Hb_015306_010 Hb_000866_190--Hb_015306_010 Hb_001135_010 Hb_001135_010 Hb_000866_190--Hb_001135_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0579052 1.6257 3.07613 4.35201 0.00972939 0.0279705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0329605 4.58141 2.24082

CAGE analysis