Hb_000599_050

Information

Type -
Description -
Location Contig599: 44761-45481
Sequence    

Annotation

kegg
ID rcu:RCOM_1334230
description vacuolar ATP synthase subunit G plant, putative
nr
ID XP_002521830.1
description vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
swissprot
ID Q9SP55
description V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1
trembl
ID B9S761
description Vacuolar ATP synthase subunit G plant, putative OS=Ricinus communis GN=RCOM_1334230 PE=4 SV=1
Gene Ontology
ID GO:0016471
description v-type proton atpase subunit g1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_050 0.0 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
2 Hb_000861_050 0.1605179767 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
3 Hb_002235_230 0.1692622409 - - latex abundant protein 1 [Hevea brasiliensis]
4 Hb_029584_140 0.1746074909 - - senescence-associated family protein [Populus trichocarpa]
5 Hb_006816_440 0.1798058943 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_005410_030 0.1826751379 - - glutaredoxin 2 [Hevea brasiliensis]
7 Hb_000603_210 0.1829560204 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
8 Hb_149683_010 0.1832124856 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
9 Hb_000178_110 0.1848385742 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001671_060 0.1850420786 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
11 Hb_000005_030 0.1886914922 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
12 Hb_003540_230 0.1894787927 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
13 Hb_030765_020 0.1928657263 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_007120_070 0.1933830689 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
15 Hb_000250_010 0.1957709652 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_000052_010 0.1980201359 - - hypothetical protein M569_08416, partial [Genlisea aurea]
17 Hb_000714_010 0.1996690824 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
18 Hb_000580_170 0.2033711144 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
19 Hb_012366_020 0.2074145773 - - unnamed protein product [Vitis vinifera]
20 Hb_000184_180 0.2090413663 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000599_050 Hb_000599_050 Hb_000861_050 Hb_000861_050 Hb_000599_050--Hb_000861_050 Hb_002235_230 Hb_002235_230 Hb_000599_050--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_000599_050--Hb_029584_140 Hb_006816_440 Hb_006816_440 Hb_000599_050--Hb_006816_440 Hb_005410_030 Hb_005410_030 Hb_000599_050--Hb_005410_030 Hb_000603_210 Hb_000603_210 Hb_000599_050--Hb_000603_210 Hb_000861_050--Hb_005410_030 Hb_000052_010 Hb_000052_010 Hb_000861_050--Hb_000052_010 Hb_003023_050 Hb_003023_050 Hb_000861_050--Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_000861_050--Hb_004055_060 Hb_000714_010 Hb_000714_010 Hb_000861_050--Hb_000714_010 Hb_000005_030 Hb_000005_030 Hb_000861_050--Hb_000005_030 Hb_002235_230--Hb_006816_440 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_149683_010 Hb_149683_010 Hb_002235_230--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_002235_230--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_002235_230--Hb_001741_090 Hb_001741_080 Hb_001741_080 Hb_002235_230--Hb_001741_080 Hb_029584_140--Hb_003540_230 Hb_003038_180 Hb_003038_180 Hb_029584_140--Hb_003038_180 Hb_012799_060 Hb_012799_060 Hb_029584_140--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_029584_140--Hb_000580_170 Hb_007120_070 Hb_007120_070 Hb_029584_140--Hb_007120_070 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020 Hb_006816_440--Hb_149683_010 Hb_000184_180 Hb_000184_180 Hb_006816_440--Hb_000184_180 Hb_000444_030 Hb_000444_030 Hb_006816_440--Hb_000444_030 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010 Hb_001109_120 Hb_001109_120 Hb_005410_030--Hb_001109_120 Hb_005410_030--Hb_000005_030 Hb_000580_160 Hb_000580_160 Hb_005410_030--Hb_000580_160 Hb_005410_030--Hb_012799_060 Hb_012779_110 Hb_012779_110 Hb_005410_030--Hb_012779_110 Hb_000300_400 Hb_000300_400 Hb_000603_210--Hb_000300_400 Hb_003777_230 Hb_003777_230 Hb_000603_210--Hb_003777_230 Hb_000603_210--Hb_002235_230 Hb_000603_210--Hb_006816_440 Hb_000603_210--Hb_000444_030 Hb_000603_210--Hb_149683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19669 0.168575 0 0 0.449345 0.326862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94221 1.4224 0.835633 0 0

CAGE analysis