Hb_000599_080

Information

Type -
Description -
Location Contig599: 58266-64709
Sequence    

Annotation

kegg
ID mdm:103428005
description TOM1-like protein 1
nr
ID XP_008364318.1
description PREDICTED: TOM1-like protein 1 [Malus domestica]
swissprot
ID Q5SRX1
description TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=2 SV=1
trembl
ID A0A0B0N6R9
description TOM1-like protein 2 OS=Gossypium arboreum GN=F383_34728 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tom1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50438: 58278-64422 , PASA_asmbl_50440: 64853-65356 , PASA_asmbl_50441: 64826-65240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_080 0.0 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
2 Hb_000042_340 0.0740702799 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
3 Hb_000563_600 0.0762021898 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
4 Hb_000922_020 0.0770018971 - - protein binding protein, putative [Ricinus communis]
5 Hb_000031_280 0.0780362881 - - -
6 Hb_000525_100 0.0820294698 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
7 Hb_032202_080 0.0831143717 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
8 Hb_001635_040 0.0838818567 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
9 Hb_001789_190 0.0850703419 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
10 Hb_001405_190 0.0891523435 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
11 Hb_001077_030 0.0918333237 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
12 Hb_001021_220 0.0931357213 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
13 Hb_005288_080 0.0933240094 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011310_130 0.0935172173 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
15 Hb_001163_120 0.0948353857 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000239_060 0.0956716306 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000162_030 0.0959244156 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
18 Hb_010362_030 0.0961035898 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
19 Hb_004631_190 0.0973116456 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_002965_040 0.09772209 - - drought-responsive family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000599_080 Hb_000599_080 Hb_000042_340 Hb_000042_340 Hb_000599_080--Hb_000042_340 Hb_000563_600 Hb_000563_600 Hb_000599_080--Hb_000563_600 Hb_000922_020 Hb_000922_020 Hb_000599_080--Hb_000922_020 Hb_000031_280 Hb_000031_280 Hb_000599_080--Hb_000031_280 Hb_000525_100 Hb_000525_100 Hb_000599_080--Hb_000525_100 Hb_032202_080 Hb_032202_080 Hb_000599_080--Hb_032202_080 Hb_000983_120 Hb_000983_120 Hb_000042_340--Hb_000983_120 Hb_001652_080 Hb_001652_080 Hb_000042_340--Hb_001652_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050 Hb_004631_190 Hb_004631_190 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070 Hb_001405_190 Hb_001405_190 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000679_340 Hb_000679_340 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030 Hb_008556_030 Hb_008556_030 Hb_000031_280--Hb_008556_030 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_000525_100--Hb_005288_080 Hb_002615_120 Hb_002615_120 Hb_000525_100--Hb_002615_120 Hb_003096_060 Hb_003096_060 Hb_000525_100--Hb_003096_060 Hb_000525_100--Hb_032202_080 Hb_000525_100--Hb_000679_340 Hb_000457_230 Hb_000457_230 Hb_032202_080--Hb_000457_230 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_032202_080--Hb_001405_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.5329 39.7013 51.7824 38.6462 39.8255 42.2373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3512 20.1452 20.9843 14.4721 31.9092

CAGE analysis