Hb_000599_100

Information

Type -
Description -
Location Contig599: 69352-70871
Sequence    

Annotation

kegg
ID tcc:TCM_004025
description Peptidase S24/S26A/S26B/S26C family protein isoform 1
nr
ID KJB11336.1
description hypothetical protein B456_001G254000 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2Q4B0
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G254000 PE=4 SV=1
Gene Ontology
ID GO:0016020
description peptidase s24 s26a s26b s26c family protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50442: 66122-69991 , PASA_asmbl_50446: 70078-70397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_100 0.0 - - hypothetical protein B456_001G254000 [Gossypium raimondii]
2 Hb_003253_050 0.1406058855 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
3 Hb_033501_010 0.1483782268 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
4 Hb_062007_010 0.1590694674 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
5 Hb_000721_040 0.160079783 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
6 Hb_000001_190 0.1633692752 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
7 Hb_001089_040 0.165014339 transcription factor TF Family: bHLH DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
8 Hb_001452_210 0.1652371956 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
9 Hb_000521_270 0.1654670554 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
10 Hb_098315_080 0.1674459355 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
11 Hb_019053_030 0.1703067795 - - PREDICTED: sulfite oxidase [Jatropha curcas]
12 Hb_002889_030 0.1709491658 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
13 Hb_002972_020 0.1713241436 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
14 Hb_001840_070 0.1714805312 - - DNA binding protein, putative [Ricinus communis]
15 Hb_179924_010 0.1716621623 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
16 Hb_150360_020 0.172253026 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
17 Hb_001246_030 0.1733771391 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
18 Hb_084481_010 0.1734809988 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
19 Hb_000181_050 0.1753203154 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
20 Hb_142343_010 0.1755203922 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000599_100 Hb_000599_100 Hb_003253_050 Hb_003253_050 Hb_000599_100--Hb_003253_050 Hb_033501_010 Hb_033501_010 Hb_000599_100--Hb_033501_010 Hb_062007_010 Hb_062007_010 Hb_000599_100--Hb_062007_010 Hb_000721_040 Hb_000721_040 Hb_000599_100--Hb_000721_040 Hb_000001_190 Hb_000001_190 Hb_000599_100--Hb_000001_190 Hb_001089_040 Hb_001089_040 Hb_000599_100--Hb_001089_040 Hb_119494_010 Hb_119494_010 Hb_003253_050--Hb_119494_010 Hb_002400_410 Hb_002400_410 Hb_003253_050--Hb_002400_410 Hb_002391_210 Hb_002391_210 Hb_003253_050--Hb_002391_210 Hb_003253_050--Hb_033501_010 Hb_119530_010 Hb_119530_010 Hb_003253_050--Hb_119530_010 Hb_002889_030 Hb_002889_030 Hb_003253_050--Hb_002889_030 Hb_033501_010--Hb_002889_030 Hb_033501_010--Hb_119530_010 Hb_000181_050 Hb_000181_050 Hb_033501_010--Hb_000181_050 Hb_003906_170 Hb_003906_170 Hb_033501_010--Hb_003906_170 Hb_002391_270 Hb_002391_270 Hb_033501_010--Hb_002391_270 Hb_000521_270 Hb_000521_270 Hb_062007_010--Hb_000521_270 Hb_002667_060 Hb_002667_060 Hb_062007_010--Hb_002667_060 Hb_062007_010--Hb_002391_210 Hb_062007_010--Hb_003253_050 Hb_146109_010 Hb_146109_010 Hb_062007_010--Hb_146109_010 Hb_004143_040 Hb_004143_040 Hb_062007_010--Hb_004143_040 Hb_002811_030 Hb_002811_030 Hb_000721_040--Hb_002811_030 Hb_004800_200 Hb_004800_200 Hb_000721_040--Hb_004800_200 Hb_011674_020 Hb_011674_020 Hb_000721_040--Hb_011674_020 Hb_000110_190 Hb_000110_190 Hb_000721_040--Hb_000110_190 Hb_000721_040--Hb_000001_190 Hb_179306_020 Hb_179306_020 Hb_000721_040--Hb_179306_020 Hb_000200_120 Hb_000200_120 Hb_000001_190--Hb_000200_120 Hb_002217_030 Hb_002217_030 Hb_000001_190--Hb_002217_030 Hb_000692_160 Hb_000692_160 Hb_000001_190--Hb_000692_160 Hb_003464_080 Hb_003464_080 Hb_000001_190--Hb_003464_080 Hb_000302_310 Hb_000302_310 Hb_000001_190--Hb_000302_310 Hb_099878_030 Hb_099878_030 Hb_000001_190--Hb_099878_030 Hb_002972_020 Hb_002972_020 Hb_001089_040--Hb_002972_020 Hb_000347_440 Hb_000347_440 Hb_001089_040--Hb_000347_440 Hb_077562_030 Hb_077562_030 Hb_001089_040--Hb_077562_030 Hb_001427_070 Hb_001427_070 Hb_001089_040--Hb_001427_070 Hb_000140_480 Hb_000140_480 Hb_001089_040--Hb_000140_480 Hb_001246_030 Hb_001246_030 Hb_001089_040--Hb_001246_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.387683 0.454923 0.196699 0.865409 0.341633 1.61044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.898289 0.741891 0.392519 2.40986 0.509247

CAGE analysis