Hb_000599_110

Information

Type -
Description -
Location Contig599: 74319-77213
Sequence    

Annotation

kegg
ID rcu:RCOM_0499370
description hypothetical protein
nr
ID XP_002532033.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94K75
description Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON1 PE=1 SV=1
trembl
ID B9T1B2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0499370 PE=4 SV=1
Gene Ontology
ID GO:0006353
description rho-n domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50449: 76479-76962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000085_060 0.0819424326 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
3 Hb_000107_620 0.0850836466 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
4 Hb_063090_010 0.0914602995 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
5 Hb_002963_020 0.0919763639 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006692_030 0.0949719611 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
7 Hb_000486_010 0.0950353183 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
8 Hb_007218_080 0.0953841338 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
9 Hb_001571_040 0.0964018574 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
10 Hb_000373_280 0.0964736031 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
11 Hb_000160_170 0.0983827756 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
12 Hb_118707_030 0.098966617 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
13 Hb_000532_070 0.0992976545 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
14 Hb_000032_570 0.0998406687 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
15 Hb_003728_020 0.1006777696 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007508_070 0.1015693767 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_000627_030 0.1024822617 - - amine oxidase, putative [Ricinus communis]
18 Hb_002527_030 0.1035017807 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
19 Hb_002876_110 0.1038050311 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001789_240 0.1041801904 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]

Gene co-expression network

sample Hb_000599_110 Hb_000599_110 Hb_000085_060 Hb_000085_060 Hb_000599_110--Hb_000085_060 Hb_000107_620 Hb_000107_620 Hb_000599_110--Hb_000107_620 Hb_063090_010 Hb_063090_010 Hb_000599_110--Hb_063090_010 Hb_002963_020 Hb_002963_020 Hb_000599_110--Hb_002963_020 Hb_006692_030 Hb_006692_030 Hb_000599_110--Hb_006692_030 Hb_000486_010 Hb_000486_010 Hb_000599_110--Hb_000486_010 Hb_001124_120 Hb_001124_120 Hb_000085_060--Hb_001124_120 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_031939_010 Hb_031939_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000085_060--Hb_007218_080 Hb_009838_080 Hb_009838_080 Hb_000107_620--Hb_009838_080 Hb_002205_070 Hb_002205_070 Hb_000107_620--Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_002079_010 Hb_002079_010 Hb_063090_010--Hb_002079_010 Hb_001789_240 Hb_001789_240 Hb_063090_010--Hb_001789_240 Hb_018838_030 Hb_018838_030 Hb_063090_010--Hb_018838_030 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_063090_010--Hb_006400_030 Hb_002963_020--Hb_000107_620 Hb_002963_020--Hb_002942_190 Hb_002963_020--Hb_002205_070 Hb_017904_010 Hb_017904_010 Hb_002963_020--Hb_017904_010 Hb_112798_030 Hb_112798_030 Hb_002963_020--Hb_112798_030 Hb_009133_010 Hb_009133_010 Hb_006692_030--Hb_009133_010 Hb_000032_570 Hb_000032_570 Hb_006692_030--Hb_000032_570 Hb_006692_030--Hb_007218_080 Hb_000889_020 Hb_000889_020 Hb_006692_030--Hb_000889_020 Hb_006692_030--Hb_001789_240 Hb_000120_500 Hb_000120_500 Hb_006692_030--Hb_000120_500 Hb_000300_610 Hb_000300_610 Hb_000486_010--Hb_000300_610 Hb_000486_010--Hb_063090_010 Hb_005306_170 Hb_005306_170 Hb_000486_010--Hb_005306_170 Hb_003333_060 Hb_003333_060 Hb_000486_010--Hb_003333_060 Hb_000627_030 Hb_000627_030 Hb_000486_010--Hb_000627_030 Hb_000329_140 Hb_000329_140 Hb_000486_010--Hb_000329_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1711 7.27736 5.07034 4.64846 23.7784 20.8799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1413 21.2362 12.6284 10.1342 12.5279

CAGE analysis