Hb_000599_160

Information

Type transcription factor
Description TF Family: NAC
Location Contig599: 132443-135549
Sequence    

Annotation

kegg
ID tcc:TCM_003998
description NAC domain protein, IPR003441
nr
ID XP_012085297.1
description PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
swissprot
ID Q84TE6
description NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2
trembl
ID R4NHJ5
description NAC transcription factor 009 OS=Jatropha curcas GN=JCGZ_17675 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 21 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50465: 133442-135598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_160 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
2 Hb_000317_170 0.0822474924 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
3 Hb_000307_060 0.0868864765 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
4 Hb_180980_010 0.088943318 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
5 Hb_000864_050 0.0894458264 - - zinc finger protein, putative [Ricinus communis]
6 Hb_007545_220 0.0943809364 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
7 Hb_029791_010 0.0949675485 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
8 Hb_133492_010 0.0982842199 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_011381_050 0.0994712169 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
10 Hb_000000_260 0.1006561602 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
11 Hb_000197_260 0.1008388832 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
12 Hb_001680_050 0.1012930685 - - -
13 Hb_021596_050 0.1020716504 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005183_070 0.1025366843 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
15 Hb_009117_020 0.1033405547 - - RALF-LIKE 32 family protein [Populus trichocarpa]
16 Hb_115572_010 0.1086509053 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
17 Hb_001722_110 0.1091954545 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
18 Hb_002186_110 0.1098687187 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
19 Hb_005588_050 0.1107782733 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000953_110 0.1145090568 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_160 Hb_000599_160 Hb_000317_170 Hb_000317_170 Hb_000599_160--Hb_000317_170 Hb_000307_060 Hb_000307_060 Hb_000599_160--Hb_000307_060 Hb_180980_010 Hb_180980_010 Hb_000599_160--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_000599_160--Hb_000864_050 Hb_007545_220 Hb_007545_220 Hb_000599_160--Hb_007545_220 Hb_029791_010 Hb_029791_010 Hb_000599_160--Hb_029791_010 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_001680_050 Hb_001680_050 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_000317_170--Hb_000307_060 Hb_000317_170--Hb_029791_010 Hb_000030_230 Hb_000030_230 Hb_000307_060--Hb_000030_230 Hb_000928_200 Hb_000928_200 Hb_000307_060--Hb_000928_200 Hb_005183_070 Hb_005183_070 Hb_000307_060--Hb_005183_070 Hb_000307_060--Hb_000000_260 Hb_133492_010 Hb_133492_010 Hb_180980_010--Hb_133492_010 Hb_180980_010--Hb_029791_010 Hb_000197_260 Hb_000197_260 Hb_180980_010--Hb_000197_260 Hb_180980_010--Hb_000317_170 Hb_000137_050 Hb_000137_050 Hb_180980_010--Hb_000137_050 Hb_000864_050--Hb_133492_010 Hb_000864_050--Hb_180980_010 Hb_002171_050 Hb_002171_050 Hb_000864_050--Hb_002171_050 Hb_004625_020 Hb_004625_020 Hb_000864_050--Hb_004625_020 Hb_001936_120 Hb_001936_120 Hb_000864_050--Hb_001936_120 Hb_000953_110 Hb_000953_110 Hb_007545_220--Hb_000953_110 Hb_007545_220--Hb_000197_260 Hb_005588_050 Hb_005588_050 Hb_007545_220--Hb_005588_050 Hb_004158_040 Hb_004158_040 Hb_007545_220--Hb_004158_040 Hb_010217_020 Hb_010217_020 Hb_007545_220--Hb_010217_020 Hb_029791_010--Hb_000000_260 Hb_029791_010--Hb_001936_120 Hb_029791_010--Hb_133492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.22063 0.683723 7.5511 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0578855 0.0455218 0 0.110144 2.40159

CAGE analysis