Hb_000599_180

Information

Type -
Description -
Location Contig599: 164130-166508
Sequence    

Annotation

kegg
ID rcu:RCOM_0260200
description Adaptin ear-binding coat-associated protein, putative
nr
ID AIU41665.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q681Q7
description Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1
trembl
ID A0A097P9S6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI18 PE=2 SV=1
Gene Ontology
ID GO:0016020
description adaptin ear-binding coat-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50468: 164259-166375
cDNA
(Sanger)
(ID:Location)		 002_C14.ab1: 164265-165454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_180 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_001001_080 0.0629991023 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
3 Hb_000050_190 0.0709040197 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021409_180 0.0825125403 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
5 Hb_000340_420 0.0835935477 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
6 Hb_000808_050 0.0841864005 - - exonuclease, putative [Ricinus communis]
7 Hb_002542_020 0.0865341937 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
8 Hb_002235_250 0.087326555 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
9 Hb_019280_030 0.0914938157 - - -
10 Hb_000136_110 0.0925100815 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
11 Hb_023344_120 0.0934905758 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
12 Hb_002997_080 0.0936113477 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
13 Hb_000205_190 0.0938728956 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_003531_080 0.0939685884 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
15 Hb_001472_060 0.0956000867 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
16 Hb_132840_110 0.0973062737 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
17 Hb_002876_320 0.0977279914 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
18 Hb_000869_020 0.0977963667 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
19 Hb_001789_190 0.0983271608 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
20 Hb_006455_120 0.0991207844 - - n6-DNA-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000599_180 Hb_000599_180 Hb_001001_080 Hb_001001_080 Hb_000599_180--Hb_001001_080 Hb_000050_190 Hb_000050_190 Hb_000599_180--Hb_000050_190 Hb_021409_180 Hb_021409_180 Hb_000599_180--Hb_021409_180 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000808_050 Hb_000808_050 Hb_000599_180--Hb_000808_050 Hb_002542_020 Hb_002542_020 Hb_000599_180--Hb_002542_020 Hb_000205_190 Hb_000205_190 Hb_001001_080--Hb_000205_190 Hb_007657_010 Hb_007657_010 Hb_001001_080--Hb_007657_010 Hb_004097_070 Hb_004097_070 Hb_001001_080--Hb_004097_070 Hb_001789_190 Hb_001789_190 Hb_001001_080--Hb_001789_190 Hb_004970_190 Hb_004970_190 Hb_001001_080--Hb_004970_190 Hb_004672_040 Hb_004672_040 Hb_000050_190--Hb_004672_040 Hb_009548_020 Hb_009548_020 Hb_000050_190--Hb_009548_020 Hb_005291_050 Hb_005291_050 Hb_000050_190--Hb_005291_050 Hb_003168_110 Hb_003168_110 Hb_000050_190--Hb_003168_110 Hb_006634_070 Hb_006634_070 Hb_000050_190--Hb_006634_070 Hb_001205_120 Hb_001205_120 Hb_021409_180--Hb_001205_120 Hb_001472_060 Hb_001472_060 Hb_021409_180--Hb_001472_060 Hb_023344_120 Hb_023344_120 Hb_021409_180--Hb_023344_120 Hb_032986_010 Hb_032986_010 Hb_021409_180--Hb_032986_010 Hb_021409_180--Hb_000808_050 Hb_132840_110 Hb_132840_110 Hb_000340_420--Hb_132840_110 Hb_003531_080 Hb_003531_080 Hb_000340_420--Hb_003531_080 Hb_007007_120 Hb_007007_120 Hb_000340_420--Hb_007007_120 Hb_000340_420--Hb_001789_190 Hb_007290_030 Hb_007290_030 Hb_000340_420--Hb_007290_030 Hb_000214_050 Hb_000214_050 Hb_000340_420--Hb_000214_050 Hb_000141_250 Hb_000141_250 Hb_000808_050--Hb_000141_250 Hb_000808_050--Hb_002542_020 Hb_008511_130 Hb_008511_130 Hb_000808_050--Hb_008511_130 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010 Hb_000808_050--Hb_001472_060 Hb_002542_020--Hb_000141_250 Hb_000442_150 Hb_000442_150 Hb_002542_020--Hb_000442_150 Hb_002542_020--Hb_008511_130 Hb_002078_020 Hb_002078_020 Hb_002542_020--Hb_002078_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.5762 21.0089 34.6253 37.8092 26.7957 35.87
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2223 22.9128 36.1291 15.34 32.6608

CAGE analysis