Hb_000599_200

Information

Type -
Description -
Location Contig599: 174637-177751
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03760g
description POPTRDRAFT_551020; ABC transporter family protein
nr
ID XP_002302037.1
description ABC transporter family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GRP1
description ABC transporter family protein OS=Populus trichocarpa GN=POPTR_0002s03760g PE=4 SV=1
Gene Ontology
ID GO:0000166
description abc transporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50477: 177390-177599
cDNA
(Sanger)
(ID:Location)		 020_F09.ab1: 177390-177599 , 046_A19.ab1: 177390-177599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_200 0.0 - - ABC transporter family protein [Populus trichocarpa]
2 Hb_000733_190 0.1121101165 - - zinc ion binding protein, putative [Ricinus communis]
3 Hb_001104_130 0.1422324983 - - C-14 sterol reductase, putative [Ricinus communis]
4 Hb_000004_020 0.1452620733 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000084_200 0.1513342544 - - PREDICTED: uncharacterized protein LOC105634688 isoform X2 [Jatropha curcas]
6 Hb_009680_020 0.1616268431 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
7 Hb_002928_090 0.1618852551 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
8 Hb_001242_120 0.1627803332 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
9 Hb_005015_060 0.1632857327 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
10 Hb_001014_110 0.1641825193 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
11 Hb_004724_460 0.1645813152 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
12 Hb_004881_030 0.1665972817 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
13 Hb_000539_050 0.1685850533 - - bile acid:sodium symporter, putative [Ricinus communis]
14 Hb_005725_130 0.1691866437 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
15 Hb_002481_060 0.1722233525 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
16 Hb_002093_060 0.17244271 - - phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_012340_070 0.172699811 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
18 Hb_000087_070 0.1747025406 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
19 Hb_003878_200 0.1760588579 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
20 Hb_001584_340 0.1761487398 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_200 Hb_000599_200 Hb_000733_190 Hb_000733_190 Hb_000599_200--Hb_000733_190 Hb_001104_130 Hb_001104_130 Hb_000599_200--Hb_001104_130 Hb_000004_020 Hb_000004_020 Hb_000599_200--Hb_000004_020 Hb_000084_200 Hb_000084_200 Hb_000599_200--Hb_000084_200 Hb_009680_020 Hb_009680_020 Hb_000599_200--Hb_009680_020 Hb_002928_090 Hb_002928_090 Hb_000599_200--Hb_002928_090 Hb_001242_120 Hb_001242_120 Hb_000733_190--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_000733_190--Hb_001051_050 Hb_000733_190--Hb_009680_020 Hb_012733_040 Hb_012733_040 Hb_000733_190--Hb_012733_040 Hb_000733_190--Hb_002928_090 Hb_004881_030 Hb_004881_030 Hb_001104_130--Hb_004881_030 Hb_000107_110 Hb_000107_110 Hb_001104_130--Hb_000107_110 Hb_002226_080 Hb_002226_080 Hb_001104_130--Hb_002226_080 Hb_009661_030 Hb_009661_030 Hb_001104_130--Hb_009661_030 Hb_000014_040 Hb_000014_040 Hb_001104_130--Hb_000014_040 Hb_001104_130--Hb_000004_020 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100 Hb_005015_060 Hb_005015_060 Hb_000084_200--Hb_005015_060 Hb_001014_110 Hb_001014_110 Hb_000084_200--Hb_001014_110 Hb_004724_460 Hb_004724_460 Hb_000084_200--Hb_004724_460 Hb_000608_380 Hb_000608_380 Hb_000084_200--Hb_000608_380 Hb_005701_060 Hb_005701_060 Hb_000084_200--Hb_005701_060 Hb_017987_030 Hb_017987_030 Hb_009680_020--Hb_017987_030 Hb_000107_150 Hb_000107_150 Hb_009680_020--Hb_000107_150 Hb_000110_250 Hb_000110_250 Hb_009680_020--Hb_000110_250 Hb_000179_270 Hb_000179_270 Hb_009680_020--Hb_000179_270 Hb_002477_010 Hb_002477_010 Hb_009680_020--Hb_002477_010 Hb_002928_090--Hb_000014_040 Hb_002928_090--Hb_001242_120 Hb_002928_090--Hb_001051_050 Hb_005725_130 Hb_005725_130 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_002928_090--Hb_009569_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.816294 0.1789 0.719838 2.01162 0.387914 0.887839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.861603 0.833832 0.0943867 1.18071 1.46657

CAGE analysis