Hb_000599_210

Information

Type -
Description -
Location Contig599: 183114-190734
Sequence    

Annotation

kegg
ID rcu:RCOM_0259860
description serine/threonine-protein kinase, putative (EC:2.7.11.13)
nr
ID XP_002529845.1
description serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID Q6TGC6
description Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1
trembl
ID B9SV26
description Serine/threonine-protein kinase, putative OS=Ricinus communis GN=RCOM_0259860 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase tricorner-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50478: 183841-184167 , PASA_asmbl_50479: 183848-184158 , PASA_asmbl_50480: 184781-185425 , PASA_asmbl_50482: 186227-190458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_210 0.0 - - serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_002615_030 0.0871883376 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
3 Hb_005218_080 0.0960809291 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_171718_010 0.0980814598 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
5 Hb_000365_010 0.0995054148 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
6 Hb_002811_150 0.1030360059 - - PREDICTED: uncharacterized protein LOC105647666 [Jatropha curcas]
7 Hb_000622_290 0.1039794204 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
8 Hb_005305_020 0.1060696238 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
9 Hb_000358_020 0.1085419491 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
10 Hb_002762_110 0.1089952016 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005016_010 0.1094283038 - - AMP dependent CoA ligase, putative [Ricinus communis]
12 Hb_001619_060 0.1105457836 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
13 Hb_000035_350 0.1134311617 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_000909_080 0.1139545361 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
15 Hb_055690_010 0.1139965694 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_000258_050 0.1146422944 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
17 Hb_000560_040 0.1157478348 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_001946_380 0.1179312471 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
19 Hb_003875_030 0.1241020016 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
20 Hb_000088_260 0.1250082466 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_210 Hb_000599_210 Hb_002615_030 Hb_002615_030 Hb_000599_210--Hb_002615_030 Hb_005218_080 Hb_005218_080 Hb_000599_210--Hb_005218_080 Hb_171718_010 Hb_171718_010 Hb_000599_210--Hb_171718_010 Hb_000365_010 Hb_000365_010 Hb_000599_210--Hb_000365_010 Hb_002811_150 Hb_002811_150 Hb_000599_210--Hb_002811_150 Hb_000622_290 Hb_000622_290 Hb_000599_210--Hb_000622_290 Hb_000023_310 Hb_000023_310 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_007590_090 Hb_007590_090 Hb_002615_030--Hb_007590_090 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_002615_030--Hb_000365_010 Hb_000358_020 Hb_000358_020 Hb_005218_080--Hb_000358_020 Hb_003440_020 Hb_003440_020 Hb_005218_080--Hb_003440_020 Hb_000909_080 Hb_000909_080 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_005218_080--Hb_171718_010 Hb_002762_110 Hb_002762_110 Hb_005218_080--Hb_002762_110 Hb_000035_350 Hb_000035_350 Hb_171718_010--Hb_000035_350 Hb_171718_010--Hb_000358_020 Hb_171718_010--Hb_002762_110 Hb_001946_380 Hb_001946_380 Hb_171718_010--Hb_001946_380 Hb_003875_030 Hb_003875_030 Hb_171718_010--Hb_003875_030 Hb_000365_010--Hb_000909_080 Hb_001301_280 Hb_001301_280 Hb_000365_010--Hb_001301_280 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_011224_050 Hb_011224_050 Hb_000365_010--Hb_011224_050 Hb_001951_060 Hb_001951_060 Hb_000365_010--Hb_001951_060 Hb_006153_060 Hb_006153_060 Hb_002811_150--Hb_006153_060 Hb_002811_150--Hb_000622_290 Hb_002811_150--Hb_002762_110 Hb_002811_150--Hb_171718_010 Hb_007192_030 Hb_007192_030 Hb_002811_150--Hb_007192_030 Hb_000622_290--Hb_002762_110 Hb_000622_290--Hb_007192_030 Hb_004644_030 Hb_004644_030 Hb_000622_290--Hb_004644_030 Hb_000622_290--Hb_001946_380 Hb_000107_430 Hb_000107_430 Hb_000622_290--Hb_000107_430 Hb_001369_790 Hb_001369_790 Hb_000622_290--Hb_001369_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91469 6.40717 7.47293 13.094 1.22425 2.2403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58005 8.69867 5.34544 6.1168 16.8291

CAGE analysis