Hb_000599_250

Information

Type -
Description -
Location Contig599: 261446-269401
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03730g
description POPTRDRAFT_816074; hypothetical protein
nr
ID XP_002302034.1
description hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID B9GRN8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03730g PE=3 SV=1
Gene Ontology
ID GO:0004672
description casein kinase i-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50483: 261340-269400 , PASA_asmbl_50484: 265739-265969 , PASA_asmbl_50485: 266678-267006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_250 0.0 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
2 Hb_004934_100 0.035978497 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001711_020 0.0417549364 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
4 Hb_000375_350 0.0547463301 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
5 Hb_001300_150 0.054752194 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
6 Hb_005496_140 0.0621846447 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002641_060 0.0626727496 - - prefoldin subunit, putative [Ricinus communis]
8 Hb_000200_020 0.0627936854 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
9 Hb_006478_020 0.0639133581 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_001252_130 0.0642868287 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
11 Hb_008841_020 0.064334454 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
12 Hb_003582_060 0.0665851174 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
13 Hb_001489_080 0.0673473544 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_010361_010 0.0676980887 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
15 Hb_000081_160 0.0681798593 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
16 Hb_002600_090 0.0684585676 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000116_270 0.0691363783 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
18 Hb_000003_230 0.0697392908 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
19 Hb_017895_040 0.0707385096 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
20 Hb_000260_030 0.0709088537 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]

Gene co-expression network

sample Hb_000599_250 Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_003697_040 Hb_003697_040 Hb_004934_100--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_001711_020--Hb_004934_100 Hb_001711_020--Hb_001300_150 Hb_002600_090 Hb_002600_090 Hb_001711_020--Hb_002600_090 Hb_001971_010 Hb_001971_010 Hb_001711_020--Hb_001971_010 Hb_001711_020--Hb_000375_350 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_001300_150 Hb_000375_350--Hb_005496_140 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_002641_060--Hb_003416_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4859 19.2091 37.8854 46.8823 28.927 37.814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.5363 53.5839 51.0529 31.8532 36.7599

CAGE analysis