Hb_000599_280

Information

Type -
Description -
Location Contig599: 288188-290983
Sequence    

Annotation

kegg
ID rcu:RCOM_0259210
description 60S ribosomal protein L14, putative
nr
ID XP_012085279.1
description PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
swissprot
ID Q9T043
description 60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1
trembl
ID A0A067JRJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17665 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l14-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50493: 288016-290906 , PASA_asmbl_50494: 288835-289168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_280 0.0 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
2 Hb_011377_020 0.0596735581 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
3 Hb_000270_720 0.0711256258 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
4 Hb_004007_180 0.076266967 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
5 Hb_000454_180 0.0918578336 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
6 Hb_002391_220 0.0926826353 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
7 Hb_000172_420 0.0983618057 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_012395_130 0.0988728588 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_002316_120 0.100434793 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
10 Hb_000062_390 0.1006125713 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
11 Hb_006588_080 0.1030633995 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
12 Hb_004754_070 0.1034522306 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_000069_140 0.1039394692 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
14 Hb_003777_210 0.109280451 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
15 Hb_001780_050 0.1105529761 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
16 Hb_007120_090 0.1109718643 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
17 Hb_120823_010 0.1109835868 - - -
18 Hb_001155_040 0.1110005665 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_000789_110 0.1122676903 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
20 Hb_000997_120 0.1161257807 - - 40S ribosomal protein S15E [Hevea brasiliensis]

Gene co-expression network

sample Hb_000599_280 Hb_000599_280 Hb_011377_020 Hb_011377_020 Hb_000599_280--Hb_011377_020 Hb_000270_720 Hb_000270_720 Hb_000599_280--Hb_000270_720 Hb_004007_180 Hb_004007_180 Hb_000599_280--Hb_004007_180 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_002391_220 Hb_002391_220 Hb_000599_280--Hb_002391_220 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420 Hb_012395_130 Hb_012395_130 Hb_011377_020--Hb_012395_130 Hb_004754_070 Hb_004754_070 Hb_011377_020--Hb_004754_070 Hb_006588_080 Hb_006588_080 Hb_011377_020--Hb_006588_080 Hb_001780_050 Hb_001780_050 Hb_011377_020--Hb_001780_050 Hb_011377_020--Hb_004007_180 Hb_000789_110 Hb_000789_110 Hb_000270_720--Hb_000789_110 Hb_002316_120 Hb_002316_120 Hb_000270_720--Hb_002316_120 Hb_000270_720--Hb_004007_180 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_004007_180--Hb_002316_120 Hb_004007_180--Hb_006588_080 Hb_004007_180--Hb_000789_110 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050 Hb_003057_020 Hb_003057_020 Hb_000454_180--Hb_003057_020 Hb_000454_180--Hb_006588_080 Hb_007313_080 Hb_007313_080 Hb_000454_180--Hb_007313_080 Hb_000454_180--Hb_011377_020 Hb_007120_090 Hb_007120_090 Hb_000454_180--Hb_007120_090 Hb_000260_200 Hb_000260_200 Hb_002391_220--Hb_000260_200 Hb_000069_140 Hb_000069_140 Hb_002391_220--Hb_000069_140 Hb_000445_490 Hb_000445_490 Hb_002391_220--Hb_000445_490 Hb_001304_140 Hb_001304_140 Hb_002391_220--Hb_001304_140 Hb_002391_220--Hb_000270_720 Hb_002248_100 Hb_002248_100 Hb_000172_420--Hb_002248_100 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.8313 12.6191 43.8893 83.2374 30.5013 87.2366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
258.16 469.269 94.685 70.1056 70.1811

CAGE analysis