Hb_000599_300

Information

Type -
Description -
Location Contig599: 304470-311088
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24900g
description POPTRDRAFT_761365; RabGAP/TBC domain-containing family protein
nr
ID XP_012085278.1
description PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
swissprot
ID Q9CXF4
description TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1
trembl
ID A0A067JRC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50496: 304518-304650 , PASA_asmbl_50497: 305079-305852 , PASA_asmbl_50498: 306232-307516 , PASA_asmbl_50499: 308389-310127 , PASA_asmbl_50500: 310177-310854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_300 0.0 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
2 Hb_002893_080 0.0664921427 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
3 Hb_003633_030 0.0674828513 - - f-actin capping protein alpha, putative [Ricinus communis]
4 Hb_007672_060 0.0687859647 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
5 Hb_001579_270 0.0697359538 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
6 Hb_002473_130 0.077320125 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
7 Hb_000054_090 0.07819279 - - zinc finger protein, putative [Ricinus communis]
8 Hb_033594_120 0.079741196 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
9 Hb_003226_140 0.0797580786 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
10 Hb_025194_100 0.0804323109 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_008748_040 0.0808103138 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
12 Hb_000421_220 0.0811112453 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
13 Hb_007017_030 0.0824400717 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
14 Hb_000441_200 0.0831696548 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
15 Hb_000193_270 0.085313472 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
16 Hb_008406_190 0.0860311838 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
17 Hb_015934_070 0.0870589584 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
18 Hb_026198_070 0.0880528508 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
19 Hb_000081_160 0.088533466 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
20 Hb_001579_220 0.0885802982 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_300 Hb_000599_300 Hb_002893_080 Hb_002893_080 Hb_000599_300--Hb_002893_080 Hb_003633_030 Hb_003633_030 Hb_000599_300--Hb_003633_030 Hb_007672_060 Hb_007672_060 Hb_000599_300--Hb_007672_060 Hb_001579_270 Hb_001579_270 Hb_000599_300--Hb_001579_270 Hb_002473_130 Hb_002473_130 Hb_000599_300--Hb_002473_130 Hb_000054_090 Hb_000054_090 Hb_000599_300--Hb_000054_090 Hb_007017_030 Hb_007017_030 Hb_002893_080--Hb_007017_030 Hb_008406_190 Hb_008406_190 Hb_002893_080--Hb_008406_190 Hb_002893_080--Hb_003633_030 Hb_000116_440 Hb_000116_440 Hb_002893_080--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_002893_080--Hb_001579_220 Hb_033594_120 Hb_033594_120 Hb_003633_030--Hb_033594_120 Hb_003633_030--Hb_007017_030 Hb_000421_220 Hb_000421_220 Hb_003633_030--Hb_000421_220 Hb_001279_150 Hb_001279_150 Hb_003633_030--Hb_001279_150 Hb_002947_030 Hb_002947_030 Hb_007672_060--Hb_002947_030 Hb_007672_060--Hb_000054_090 Hb_007672_060--Hb_001579_270 Hb_007672_060--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_007672_060--Hb_003428_030 Hb_001579_270--Hb_000054_090 Hb_054865_120 Hb_054865_120 Hb_001579_270--Hb_054865_120 Hb_001579_270--Hb_033594_120 Hb_001579_270--Hb_003633_030 Hb_002271_020 Hb_002271_020 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_001252_130 Hb_001252_130 Hb_000054_090--Hb_001252_130 Hb_000054_090--Hb_007017_030 Hb_000081_160 Hb_000081_160 Hb_000054_090--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_000054_090--Hb_001971_010 Hb_000173_290 Hb_000173_290 Hb_000054_090--Hb_000173_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63781 1.51487 2.15946 3.60101 3.09741 4.3036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56823 4.16301 2.7365 2.94473 3.42481

CAGE analysis