Hb_000599_310

Information

Type -
Description -
Location Contig599: 312379-314812
Sequence    

Annotation

kegg
ID rcu:RCOM_0259090
description Glycolipid transfer protein, putative
nr
ID XP_012085277.1
description PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
swissprot
ID O22797
description Glycolipid transfer protein 1 OS=Arabidopsis thaliana GN=GLTP1 PE=2 SV=1
trembl
ID B9SV19
description Glycolipid transfer protein, putative OS=Ricinus communis GN=RCOM_0259090 PE=4 SV=1
Gene Ontology
ID GO:0005737
description pleckstrin homology domain-containing family a member 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50501: 313210-313754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_310 0.0 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
2 Hb_002338_030 0.1992812091 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
3 Hb_002835_340 0.2110070632 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
4 Hb_000886_030 0.2116236582 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
5 Hb_007849_010 0.2257414259 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
6 Hb_000049_200 0.2280072319 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
7 Hb_002960_090 0.2309271064 - - protein with unknown function [Ricinus communis]
8 Hb_001269_250 0.2320283796 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
9 Hb_001675_030 0.2348067195 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000984_260 0.2364268912 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
11 Hb_002627_020 0.2389273477 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
12 Hb_088274_010 0.2418428693 - - PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
13 Hb_002631_300 0.2438782738 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
14 Hb_097218_020 0.2467121961 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
15 Hb_005144_190 0.2526476061 - - hypothetical protein F383_09558 [Gossypium arboreum]
16 Hb_001300_170 0.2533984456 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003178_020 0.2536128194 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
18 Hb_000529_280 0.2554045991 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
19 Hb_003673_040 0.2564796447 - - dynamin family protein [Populus trichocarpa]
20 Hb_000656_190 0.2578346551 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_310 Hb_000599_310 Hb_002338_030 Hb_002338_030 Hb_000599_310--Hb_002338_030 Hb_002835_340 Hb_002835_340 Hb_000599_310--Hb_002835_340 Hb_000886_030 Hb_000886_030 Hb_000599_310--Hb_000886_030 Hb_007849_010 Hb_007849_010 Hb_000599_310--Hb_007849_010 Hb_000049_200 Hb_000049_200 Hb_000599_310--Hb_000049_200 Hb_002960_090 Hb_002960_090 Hb_000599_310--Hb_002960_090 Hb_002338_030--Hb_002835_340 Hb_003673_040 Hb_003673_040 Hb_002338_030--Hb_003673_040 Hb_006836_030 Hb_006836_030 Hb_002338_030--Hb_006836_030 Hb_003687_220 Hb_003687_220 Hb_002338_030--Hb_003687_220 Hb_000317_420 Hb_000317_420 Hb_002338_030--Hb_000317_420 Hb_001975_040 Hb_001975_040 Hb_002835_340--Hb_001975_040 Hb_002835_340--Hb_000317_420 Hb_003592_030 Hb_003592_030 Hb_002835_340--Hb_003592_030 Hb_002539_040 Hb_002539_040 Hb_002835_340--Hb_002539_040 Hb_012807_130 Hb_012807_130 Hb_002835_340--Hb_012807_130 Hb_002660_120 Hb_002660_120 Hb_002835_340--Hb_002660_120 Hb_003687_030 Hb_003687_030 Hb_000886_030--Hb_003687_030 Hb_001675_030 Hb_001675_030 Hb_000886_030--Hb_001675_030 Hb_000529_280 Hb_000529_280 Hb_000886_030--Hb_000529_280 Hb_172632_050 Hb_172632_050 Hb_000886_030--Hb_172632_050 Hb_004787_040 Hb_004787_040 Hb_000886_030--Hb_004787_040 Hb_000465_510 Hb_000465_510 Hb_000886_030--Hb_000465_510 Hb_003120_040 Hb_003120_040 Hb_007849_010--Hb_003120_040 Hb_000007_430 Hb_000007_430 Hb_007849_010--Hb_000007_430 Hb_000984_260 Hb_000984_260 Hb_007849_010--Hb_000984_260 Hb_002918_130 Hb_002918_130 Hb_007849_010--Hb_002918_130 Hb_007849_010--Hb_001675_030 Hb_002627_020 Hb_002627_020 Hb_000049_200--Hb_002627_020 Hb_000300_100 Hb_000300_100 Hb_000049_200--Hb_000300_100 Hb_000392_250 Hb_000392_250 Hb_000049_200--Hb_000392_250 Hb_000049_200--Hb_002960_090 Hb_002016_140 Hb_002016_140 Hb_000049_200--Hb_002016_140 Hb_001300_170 Hb_001300_170 Hb_000049_200--Hb_001300_170 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_101146_010 Hb_101146_010 Hb_002960_090--Hb_101146_010 Hb_002960_090--Hb_000984_260 Hb_002960_090--Hb_002627_020 Hb_006210_020 Hb_006210_020 Hb_002960_090--Hb_006210_020 Hb_005701_110 Hb_005701_110 Hb_002960_090--Hb_005701_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.36377 0.8449 0.897957 0 0.0353472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.460349 1.01315 0 0.680191 0.141396

CAGE analysis