Hb_000599_360

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig599: 340141-343536
Sequence    

Annotation

kegg
ID pop:POPTR_0001s38870g
description POPTRDRAFT_753401; hypothetical protein
nr
ID XP_012073224.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LCH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06618 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50512: 342564-343306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_360 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_158845_060 0.0674229947 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
3 Hb_021977_010 0.0715133818 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
4 Hb_003964_110 0.0781631699 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
5 Hb_160608_010 0.0800433444 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
6 Hb_005741_040 0.080283883 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
7 Hb_080147_050 0.0812738254 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
8 Hb_001511_180 0.0816901889 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
9 Hb_009476_120 0.0822765787 - - Clathrin heavy chain 1 [Glycine soja]
10 Hb_001414_010 0.0834090279 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
11 Hb_001587_030 0.0878223506 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
12 Hb_001226_130 0.0898074779 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
13 Hb_001246_130 0.0898704562 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
14 Hb_005854_040 0.0901187039 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000479_110 0.0903364332 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
16 Hb_001507_050 0.0922622355 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_009615_160 0.0927869583 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
18 Hb_001504_060 0.0930280853 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
19 Hb_000007_410 0.093131822 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
20 Hb_027760_060 0.0936079555 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]

Gene co-expression network

sample Hb_000599_360 Hb_000599_360 Hb_158845_060 Hb_158845_060 Hb_000599_360--Hb_158845_060 Hb_021977_010 Hb_021977_010 Hb_000599_360--Hb_021977_010 Hb_003964_110 Hb_003964_110 Hb_000599_360--Hb_003964_110 Hb_160608_010 Hb_160608_010 Hb_000599_360--Hb_160608_010 Hb_005741_040 Hb_005741_040 Hb_000599_360--Hb_005741_040 Hb_080147_050 Hb_080147_050 Hb_000599_360--Hb_080147_050 Hb_158845_060--Hb_003964_110 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080 Hb_158845_060--Hb_021977_010 Hb_001414_010 Hb_001414_010 Hb_021977_010--Hb_001414_010 Hb_003661_010 Hb_003661_010 Hb_021977_010--Hb_003661_010 Hb_009476_120 Hb_009476_120 Hb_021977_010--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_021977_010--Hb_001998_220 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150 Hb_000260_400 Hb_000260_400 Hb_005741_040--Hb_000260_400 Hb_002687_180 Hb_002687_180 Hb_005741_040--Hb_002687_180 Hb_013726_050 Hb_013726_050 Hb_005741_040--Hb_013726_050 Hb_002849_050 Hb_002849_050 Hb_005741_040--Hb_002849_050 Hb_000317_110 Hb_000317_110 Hb_005741_040--Hb_000317_110 Hb_020805_180 Hb_020805_180 Hb_080147_050--Hb_020805_180 Hb_000321_090 Hb_000321_090 Hb_080147_050--Hb_000321_090 Hb_000834_230 Hb_000834_230 Hb_080147_050--Hb_000834_230 Hb_000787_200 Hb_000787_200 Hb_080147_050--Hb_000787_200 Hb_007245_020 Hb_007245_020 Hb_080147_050--Hb_007245_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.949919 2.2499 2.29276 3.05284 1.0223 0.827343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.572381 0.460443 1.05517 2.82478 2.41842

CAGE analysis