Hb_000600_060

Information

Type -
Description -
Location Contig600: 74688-82658
Sequence    

Annotation

kegg
ID gmx:100783799
description uncharacterized LOC100783799
nr
ID XP_012071508.1
description PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2H8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04033 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dnase i-like superfamily protein isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50551: 75515-82664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000600_060 0.0 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
2 Hb_000460_080 0.0785064356 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
3 Hb_000963_040 0.0795415981 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
4 Hb_000120_280 0.0831291173 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
5 Hb_000352_300 0.084641255 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
6 Hb_001141_310 0.0888397766 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
7 Hb_000477_050 0.0891286794 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
8 Hb_116349_070 0.0914197456 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
9 Hb_006588_200 0.0916912207 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
10 Hb_000130_020 0.0928113442 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
11 Hb_001434_080 0.0935083256 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
12 Hb_005918_010 0.0936567252 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
13 Hb_000161_210 0.0944617802 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
14 Hb_002728_080 0.0959188724 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_142218_020 0.098335371 - - actin family protein [Populus trichocarpa]
16 Hb_003528_030 0.0987067176 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
17 Hb_000182_040 0.0997377184 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
18 Hb_001789_030 0.0999492882 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
19 Hb_000513_090 0.1007720248 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_030982_030 0.1019866802 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000600_060 Hb_000600_060 Hb_000460_080 Hb_000460_080 Hb_000600_060--Hb_000460_080 Hb_000963_040 Hb_000963_040 Hb_000600_060--Hb_000963_040 Hb_000120_280 Hb_000120_280 Hb_000600_060--Hb_000120_280 Hb_000352_300 Hb_000352_300 Hb_000600_060--Hb_000352_300 Hb_001141_310 Hb_001141_310 Hb_000600_060--Hb_001141_310 Hb_000477_050 Hb_000477_050 Hb_000600_060--Hb_000477_050 Hb_000460_080--Hb_000477_050 Hb_002071_070 Hb_002071_070 Hb_000460_080--Hb_002071_070 Hb_002728_080 Hb_002728_080 Hb_000460_080--Hb_002728_080 Hb_000460_080--Hb_000120_280 Hb_002989_020 Hb_002989_020 Hb_000460_080--Hb_002989_020 Hb_001434_080 Hb_001434_080 Hb_000460_080--Hb_001434_080 Hb_030982_030 Hb_030982_030 Hb_000963_040--Hb_030982_030 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_003119_090 Hb_003119_090 Hb_000963_040--Hb_003119_090 Hb_001227_130 Hb_001227_130 Hb_000963_040--Hb_001227_130 Hb_016347_020 Hb_016347_020 Hb_000963_040--Hb_016347_020 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_007481_010 Hb_007481_010 Hb_000352_300--Hb_007481_010 Hb_003528_030 Hb_003528_030 Hb_000352_300--Hb_003528_030 Hb_000184_070 Hb_000184_070 Hb_000352_300--Hb_000184_070 Hb_000477_100 Hb_000477_100 Hb_000352_300--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_000352_300--Hb_000046_500 Hb_003683_020 Hb_003683_020 Hb_000352_300--Hb_003683_020 Hb_000258_110 Hb_000258_110 Hb_001141_310--Hb_000258_110 Hb_015026_130 Hb_015026_130 Hb_001141_310--Hb_015026_130 Hb_121089_030 Hb_121089_030 Hb_001141_310--Hb_121089_030 Hb_086063_020 Hb_086063_020 Hb_001141_310--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_001141_310--Hb_188063_050 Hb_001552_030 Hb_001552_030 Hb_001141_310--Hb_001552_030 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_000477_050--Hb_001009_320 Hb_000477_050--Hb_003528_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03205 2.83809 3.89554 5.03981 3.65374 2.44564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09761 1.97944 2.92122 5.30676 1.81281

CAGE analysis