Hb_000600_080

Information

Type -
Description -
Location Contig600: 95245-98865
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000600_080 0.0 - - -
2 Hb_000685_140 0.0913630933 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
3 Hb_072173_010 0.1000803108 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
4 Hb_001411_100 0.1064225746 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
5 Hb_000101_320 0.1210060375 - - -
6 Hb_031949_010 0.1369023137 - - -
7 Hb_000959_370 0.1395841439 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_011242_070 0.1404635364 - - beta-cyanoalanine synthase [Hevea brasiliensis]
9 Hb_001452_090 0.1422264041 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
10 Hb_131320_010 0.1570894029 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
11 Hb_008834_010 0.1571720628 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
12 Hb_028872_100 0.1590517408 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
13 Hb_005470_040 0.1594803791 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
14 Hb_109489_010 0.1615858007 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
15 Hb_010812_140 0.1645926574 - - protein binding protein, putative [Ricinus communis]
16 Hb_012023_010 0.1648295303 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002815_040 0.1660273928 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
18 Hb_000059_080 0.1669649493 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
19 Hb_002997_050 0.1688268482 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
20 Hb_000061_110 0.16988185 - - -

Gene co-expression network

sample Hb_000600_080 Hb_000600_080 Hb_000685_140 Hb_000685_140 Hb_000600_080--Hb_000685_140 Hb_072173_010 Hb_072173_010 Hb_000600_080--Hb_072173_010 Hb_001411_100 Hb_001411_100 Hb_000600_080--Hb_001411_100 Hb_000101_320 Hb_000101_320 Hb_000600_080--Hb_000101_320 Hb_031949_010 Hb_031949_010 Hb_000600_080--Hb_031949_010 Hb_000959_370 Hb_000959_370 Hb_000600_080--Hb_000959_370 Hb_000685_140--Hb_000101_320 Hb_000685_140--Hb_001411_100 Hb_028872_100 Hb_028872_100 Hb_000685_140--Hb_028872_100 Hb_001452_090 Hb_001452_090 Hb_000685_140--Hb_001452_090 Hb_008834_010 Hb_008834_010 Hb_000685_140--Hb_008834_010 Hb_072173_010--Hb_000101_320 Hb_072173_010--Hb_000685_140 Hb_072173_010--Hb_008834_010 Hb_002733_050 Hb_002733_050 Hb_072173_010--Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_072173_010--Hb_114121_010 Hb_001411_100--Hb_000101_320 Hb_001411_100--Hb_028872_100 Hb_001411_100--Hb_001452_090 Hb_000417_150 Hb_000417_150 Hb_001411_100--Hb_000417_150 Hb_000101_320--Hb_001452_090 Hb_000101_320--Hb_008834_010 Hb_000101_320--Hb_028872_100 Hb_000009_390 Hb_000009_390 Hb_000101_320--Hb_000009_390 Hb_005470_040 Hb_005470_040 Hb_031949_010--Hb_005470_040 Hb_000377_160 Hb_000377_160 Hb_031949_010--Hb_000377_160 Hb_001856_110 Hb_001856_110 Hb_031949_010--Hb_001856_110 Hb_031949_010--Hb_000009_390 Hb_026053_030 Hb_026053_030 Hb_031949_010--Hb_026053_030 Hb_031949_010--Hb_000417_150 Hb_006013_030 Hb_006013_030 Hb_000959_370--Hb_006013_030 Hb_032299_070 Hb_032299_070 Hb_000959_370--Hb_032299_070 Hb_000959_370--Hb_002733_050 Hb_000280_120 Hb_000280_120 Hb_000959_370--Hb_000280_120 Hb_000959_370--Hb_072173_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.223695 0.0196942 0.0429476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.267497 0.383222

CAGE analysis