Hb_000601_040

Information

Type -
Description -
Location Contig601: 61514-63740
Sequence    

Annotation

kegg
ID tcc:TCM_015806
description SBP family protein
nr
ID XP_012075297.1
description PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
swissprot
ID Q9FHE4
description BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana GN=BRG1 PE=1 SV=1
trembl
ID A0A067LNC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11882 PE=4 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase boi-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50578: 61689-62598 , PASA_asmbl_50579: 62619-63226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000601_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
2 Hb_010390_010 0.1030761042 - - casein kinase, putative [Ricinus communis]
3 Hb_001473_170 0.10907535 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
4 Hb_009803_020 0.1177353079 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
5 Hb_098533_010 0.1223216092 - - hypothetical protein L484_003492 [Morus notabilis]
6 Hb_006185_030 0.1254544849 - - threonine synthase, putative [Ricinus communis]
7 Hb_001951_060 0.1260624876 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
8 Hb_003894_010 0.1267659583 - - unnamed protein product [Vitis vinifera]
9 Hb_007229_050 0.1274690965 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
10 Hb_002611_010 0.1297957738 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000258_050 0.1298950015 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
12 Hb_180378_010 0.130580948 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
13 Hb_000157_140 0.1327712974 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_011174_080 0.1358009521 - - PREDICTED: sulfite oxidase [Jatropha curcas]
15 Hb_030959_010 0.1366055052 - - cullin, putative [Ricinus communis]
16 Hb_000836_060 0.1370613334 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
17 Hb_005016_010 0.1376410531 - - AMP dependent CoA ligase, putative [Ricinus communis]
18 Hb_029584_100 0.1394678117 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
19 Hb_009711_050 0.1397053476 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
20 Hb_004030_060 0.1398505395 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000601_040 Hb_000601_040 Hb_010390_010 Hb_010390_010 Hb_000601_040--Hb_010390_010 Hb_001473_170 Hb_001473_170 Hb_000601_040--Hb_001473_170 Hb_009803_020 Hb_009803_020 Hb_000601_040--Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_000601_040--Hb_098533_010 Hb_006185_030 Hb_006185_030 Hb_000601_040--Hb_006185_030 Hb_001951_060 Hb_001951_060 Hb_000601_040--Hb_001951_060 Hb_000494_030 Hb_000494_030 Hb_010390_010--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_010390_010--Hb_004030_060 Hb_000683_050 Hb_000683_050 Hb_010390_010--Hb_000683_050 Hb_005016_010 Hb_005016_010 Hb_010390_010--Hb_005016_010 Hb_010390_010--Hb_001473_170 Hb_007416_070 Hb_007416_070 Hb_010390_010--Hb_007416_070 Hb_002311_130 Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_001473_170--Hb_000494_030 Hb_001473_170--Hb_004030_060 Hb_007313_040 Hb_007313_040 Hb_001473_170--Hb_007313_040 Hb_009803_020--Hb_098533_010 Hb_009803_020--Hb_006185_030 Hb_001040_150 Hb_001040_150 Hb_009803_020--Hb_001040_150 Hb_007229_050 Hb_007229_050 Hb_009803_020--Hb_007229_050 Hb_000768_150 Hb_000768_150 Hb_009803_020--Hb_000768_150 Hb_098533_010--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_098533_010--Hb_006185_030 Hb_098533_010--Hb_001473_170 Hb_009535_030 Hb_009535_030 Hb_098533_010--Hb_009535_030 Hb_006185_030--Hb_007229_050 Hb_006185_030--Hb_001040_150 Hb_001235_130 Hb_001235_130 Hb_006185_030--Hb_001235_130 Hb_011174_080 Hb_011174_080 Hb_006185_030--Hb_011174_080 Hb_001301_280 Hb_001301_280 Hb_001951_060--Hb_001301_280 Hb_034083_020 Hb_034083_020 Hb_001951_060--Hb_034083_020 Hb_002486_080 Hb_002486_080 Hb_001951_060--Hb_002486_080 Hb_001951_060--Hb_007416_070 Hb_000365_010 Hb_000365_010 Hb_001951_060--Hb_000365_010 Hb_001951_060--Hb_005016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67945 6.12478 5.13474 15.1548 1.92938 1.64359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.65867 3.28846 2.06495 11.7052 17.4337

CAGE analysis