Hb_000602_010

Information

Type -
Description -
Location Contig602: 23126-26579
Sequence    

Annotation

kegg
ID tcc:TCM_021923
description RHOMBOID-like 1
nr
ID XP_012074937.1
description PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
swissprot
ID Q6GMF8
description Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
trembl
ID A0A067KTP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09073 PE=4 SV=1
Gene Ontology
ID GO:0005886
description inactive rhomboid protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50605: 23159-26648
cDNA
(Sanger)
(ID:Location)		 050_E01.ab1: 25982-26648

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000602_010 0.0 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
2 Hb_000029_020 0.0767607963 - - Vesicle-associated membrane protein, putative [Ricinus communis]
3 Hb_002449_020 0.0844003345 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
4 Hb_000482_090 0.0997220911 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
5 Hb_002687_110 0.103143974 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
6 Hb_001691_210 0.1038006513 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
7 Hb_000115_060 0.1051675323 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
8 Hb_002842_020 0.1061554281 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
9 Hb_003893_010 0.1087475494 - - hypothetical protein M569_16374 [Genlisea aurea]
10 Hb_000061_320 0.1095043076 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
11 Hb_001833_110 0.109753858 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008066_010 0.1109180537 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
13 Hb_148209_110 0.1110451637 - - putative polyol transported protein 2 [Hevea brasiliensis]
14 Hb_002769_050 0.1113430945 - - PREDICTED: endophilin-A1 [Jatropha curcas]
15 Hb_003032_040 0.1130215056 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
16 Hb_001811_020 0.1131437258 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000979_230 0.1135480079 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
18 Hb_000010_470 0.1138381371 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
19 Hb_000115_330 0.1150026218 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
20 Hb_002835_410 0.115036155 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000602_010 Hb_000602_010 Hb_000029_020 Hb_000029_020 Hb_000602_010--Hb_000029_020 Hb_002449_020 Hb_002449_020 Hb_000602_010--Hb_002449_020 Hb_000482_090 Hb_000482_090 Hb_000602_010--Hb_000482_090 Hb_002687_110 Hb_002687_110 Hb_000602_010--Hb_002687_110 Hb_001691_210 Hb_001691_210 Hb_000602_010--Hb_001691_210 Hb_000115_060 Hb_000115_060 Hb_000602_010--Hb_000115_060 Hb_001811_020 Hb_001811_020 Hb_000029_020--Hb_001811_020 Hb_183086_060 Hb_183086_060 Hb_000029_020--Hb_183086_060 Hb_000029_020--Hb_002687_110 Hb_000115_330 Hb_000115_330 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_000174_090 Hb_000174_090 Hb_002449_020--Hb_000174_090 Hb_003032_040 Hb_003032_040 Hb_002449_020--Hb_003032_040 Hb_000832_140 Hb_000832_140 Hb_002449_020--Hb_000832_140 Hb_000529_190 Hb_000529_190 Hb_002449_020--Hb_000529_190 Hb_001811_050 Hb_001811_050 Hb_002449_020--Hb_001811_050 Hb_001771_090 Hb_001771_090 Hb_002449_020--Hb_001771_090 Hb_002005_020 Hb_002005_020 Hb_000482_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000482_090--Hb_004218_110 Hb_001959_210 Hb_001959_210 Hb_000482_090--Hb_001959_210 Hb_002759_060 Hb_002759_060 Hb_000482_090--Hb_002759_060 Hb_004254_120 Hb_004254_120 Hb_000482_090--Hb_004254_120 Hb_172932_010 Hb_172932_010 Hb_000482_090--Hb_172932_010 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_000089_160 Hb_000089_160 Hb_001691_210--Hb_000089_160 Hb_001718_100 Hb_001718_100 Hb_001691_210--Hb_001718_100 Hb_005997_010 Hb_005997_010 Hb_001691_210--Hb_005997_010 Hb_003175_040 Hb_003175_040 Hb_001691_210--Hb_003175_040 Hb_003020_230 Hb_003020_230 Hb_001691_210--Hb_003020_230 Hb_000205_270 Hb_000205_270 Hb_001691_210--Hb_000205_270 Hb_010710_030 Hb_010710_030 Hb_000115_060--Hb_010710_030 Hb_008066_010 Hb_008066_010 Hb_000115_060--Hb_008066_010 Hb_002681_110 Hb_002681_110 Hb_000115_060--Hb_002681_110 Hb_000840_210 Hb_000840_210 Hb_000115_060--Hb_000840_210 Hb_001329_300 Hb_001329_300 Hb_000115_060--Hb_001329_300 Hb_000115_060--Hb_183086_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0223 3.15083 6.56293 16.6219 27.9093 33.7975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4662 31.5789 51.1359 30.9752 10.7515

CAGE analysis