Hb_000603_030

Information

Type -
Description -
Location Contig603: 18914-39351
Sequence    

Annotation

kegg
ID rcu:RCOM_0707850
description Ribonuclease III, putative (EC:3.1.26.3)
nr
ID XP_002516160.1
description Ribonuclease III, putative [Ricinus communis]
swissprot
ID Q5N870
description Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1
trembl
ID B9RQZ1
description Ribonuclease III, putative OS=Ricinus communis GN=RCOM_0707850 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50632: 18974-25609 , PASA_asmbl_50633: 25692-26065 , PASA_asmbl_50634: 26479-28707 , PASA_asmbl_50635: 29443-29753 , PASA_asmbl_50636: 31153-38995 , PASA_asmbl_50637: 34207-34411 , PASA_asmbl_50638: 37906-38369 , PASA_asmbl_50639: 37955-38320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_030 0.0 - - Ribonuclease III, putative [Ricinus communis]
2 Hb_000398_080 0.0528627955 - - tip120, putative [Ricinus communis]
3 Hb_028872_070 0.0537428653 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
4 Hb_007657_020 0.056385668 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
5 Hb_002681_090 0.0570506274 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
6 Hb_000563_130 0.0579757324 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
7 Hb_004267_040 0.0613262895 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
8 Hb_002311_290 0.0614154052 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
9 Hb_003645_060 0.0621072596 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
10 Hb_005289_040 0.0664056203 - - poly(A) polymerase, putative [Ricinus communis]
11 Hb_001089_070 0.0682416361 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
12 Hb_002092_130 0.0699752986 - - PREDICTED: protein CASP-like [Oryza brachyantha]
13 Hb_133702_030 0.0722367242 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
14 Hb_000227_220 0.0727591425 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
15 Hb_028960_020 0.0734078942 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
16 Hb_000120_280 0.0736944786 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_002805_190 0.0747133886 - - spliceosome associated protein, putative [Ricinus communis]
18 Hb_000011_100 0.074714056 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
19 Hb_001062_010 0.0753496186 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
20 Hb_011231_020 0.075760552 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_030 Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_007657_020 Hb_007657_020 Hb_000603_030--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_000603_030--Hb_002681_090 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000603_030--Hb_004267_040 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000398_080--Hb_004267_040 Hb_000398_080--Hb_000563_130 Hb_028872_070--Hb_000398_080 Hb_160459_040 Hb_160459_040 Hb_028872_070--Hb_160459_040 Hb_004096_190 Hb_004096_190 Hb_028872_070--Hb_004096_190 Hb_009771_110 Hb_009771_110 Hb_028872_070--Hb_009771_110 Hb_133702_030 Hb_133702_030 Hb_028872_070--Hb_133702_030 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_002311_290 Hb_002311_290 Hb_007657_020--Hb_002311_290 Hb_000089_120 Hb_000089_120 Hb_007657_020--Hb_000089_120 Hb_002681_090--Hb_002311_290 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090 Hb_000563_130--Hb_004267_040 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_004267_040--Hb_000011_100 Hb_004267_040--Hb_000120_280 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64806 4.7968 6.26187 4.44309 6.22584 6.5785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72534 3.39989 2.97985 7.90715 5.64536

CAGE analysis