Hb_000603_070

Information

Type -
Description -
Location Contig603: 68293-69147
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50640: 68793-69133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_070 0.0 - - -
2 Hb_000215_310 0.140047273 - - -
3 Hb_000016_060 0.1448084118 - - mads box protein, putative [Ricinus communis]
4 Hb_148130_020 0.1570867156 - - -
5 Hb_000125_020 0.1604709038 transcription factor TF Family: mTERF -
6 Hb_000168_010 0.1606115888 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
7 Hb_007943_200 0.1616111775 - - Uncharacterized protein isoform 2 [Theobroma cacao]
8 Hb_002477_050 0.1616613913 - - unnamed protein product [Coffea canephora]
9 Hb_090158_010 0.1635944897 - - hypothetical protein RCOM_1968400 [Ricinus communis]
10 Hb_010984_040 0.1770075184 - - hypothetical protein M569_17286, partial [Genlisea aurea]
11 Hb_002073_010 0.1771853751 - - -
12 Hb_001195_160 0.1777589522 - - -
13 Hb_005694_020 0.179219622 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
14 Hb_099116_010 0.1910956054 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002562_110 0.1920604866 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
16 Hb_088163_010 0.1921850223 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
17 Hb_004709_020 0.1942436257 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
18 Hb_009270_030 0.1976086561 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
19 Hb_009083_030 0.1978136759 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
20 Hb_000679_190 0.1996784722 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_070 Hb_000603_070 Hb_000215_310 Hb_000215_310 Hb_000603_070--Hb_000215_310 Hb_000016_060 Hb_000016_060 Hb_000603_070--Hb_000016_060 Hb_148130_020 Hb_148130_020 Hb_000603_070--Hb_148130_020 Hb_000125_020 Hb_000125_020 Hb_000603_070--Hb_000125_020 Hb_000168_010 Hb_000168_010 Hb_000603_070--Hb_000168_010 Hb_007943_200 Hb_007943_200 Hb_000603_070--Hb_007943_200 Hb_000215_310--Hb_000168_010 Hb_002477_050 Hb_002477_050 Hb_000215_310--Hb_002477_050 Hb_038237_010 Hb_038237_010 Hb_000215_310--Hb_038237_010 Hb_001195_160 Hb_001195_160 Hb_000215_310--Hb_001195_160 Hb_090158_010 Hb_090158_010 Hb_000215_310--Hb_090158_010 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130 Hb_002781_030 Hb_002781_030 Hb_148130_020--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_148130_020--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_148130_020--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_148130_020--Hb_000928_190 Hb_000258_240 Hb_000258_240 Hb_148130_020--Hb_000258_240 Hb_000008_190 Hb_000008_190 Hb_148130_020--Hb_000008_190 Hb_000481_050 Hb_000481_050 Hb_000125_020--Hb_000481_050 Hb_000125_020--Hb_002562_110 Hb_004669_030 Hb_004669_030 Hb_000125_020--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000125_020--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000125_020--Hb_000671_120 Hb_000125_020--Hb_000016_060 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_000586_030 Hb_000586_030 Hb_000168_010--Hb_000586_030 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_007943_200--Hb_006153_030 Hb_002477_010 Hb_002477_010 Hb_007943_200--Hb_002477_010 Hb_005694_020 Hb_005694_020 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_007943_200--Hb_148130_020 Hb_002735_050 Hb_002735_050 Hb_007943_200--Hb_002735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.975038 1.70915 1.78389 17.3983 1.09722 7.47068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.98428 5.48672 1.14236 8.52633 2.07261

CAGE analysis