Hb_000603_120

Information

Type -
Description -
Location Contig603: 121361-123607
Sequence    

Annotation

kegg
ID rcu:RCOM_0707690
description Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002516154.1
description Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9CAH1
description Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1
trembl
ID B9RQY5
description Protein kinase APK1A, chloroplast, putative OS=Ricinus communis GN=RCOM_0707690 PE=4 SV=1
Gene Ontology
ID GO:0004715
description serine threonine-protein kinase at5g01020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_120 0.0 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
2 Hb_001971_020 0.1418473811 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
3 Hb_085010_010 0.1492481871 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
4 Hb_010261_030 0.1559540486 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_043939_010 0.1564629594 - - hypothetical protein B456_N011100 [Gossypium raimondii]
6 Hb_000866_390 0.1574393543 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
7 Hb_000059_080 0.1617984239 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
8 Hb_003212_010 0.1693354843 - - sucrose transporter 4 [Hevea brasiliensis]
9 Hb_004713_050 0.1713760315 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
10 Hb_117840_010 0.1724530195 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_000563_120 0.1729984308 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
12 Hb_002600_010 0.1750024385 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
13 Hb_007320_020 0.1765800304 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
14 Hb_000264_340 0.179604656 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
15 Hb_004462_020 0.1803865941 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
16 Hb_000383_020 0.1810518088 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_002218_070 0.182604819 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
18 Hb_008111_010 0.1833861214 - - hypothetical protein VITISV_021527 [Vitis vinifera]
19 Hb_126466_010 0.1851935041 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_011470_010 0.1855570777 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]

Gene co-expression network

sample Hb_000603_120 Hb_000603_120 Hb_001971_020 Hb_001971_020 Hb_000603_120--Hb_001971_020 Hb_085010_010 Hb_085010_010 Hb_000603_120--Hb_085010_010 Hb_010261_030 Hb_010261_030 Hb_000603_120--Hb_010261_030 Hb_043939_010 Hb_043939_010 Hb_000603_120--Hb_043939_010 Hb_000866_390 Hb_000866_390 Hb_000603_120--Hb_000866_390 Hb_000059_080 Hb_000059_080 Hb_000603_120--Hb_000059_080 Hb_001357_360 Hb_001357_360 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_008111_010 Hb_008111_010 Hb_001971_020--Hb_008111_010 Hb_005306_020 Hb_005306_020 Hb_001971_020--Hb_005306_020 Hb_000264_340 Hb_000264_340 Hb_001971_020--Hb_000264_340 Hb_007320_020 Hb_007320_020 Hb_001971_020--Hb_007320_020 Hb_011470_010 Hb_011470_010 Hb_085010_010--Hb_011470_010 Hb_085010_010--Hb_008111_010 Hb_126466_010 Hb_126466_010 Hb_085010_010--Hb_126466_010 Hb_002272_070 Hb_002272_070 Hb_085010_010--Hb_002272_070 Hb_085010_010--Hb_001971_020 Hb_085010_010--Hb_005306_020 Hb_117840_010 Hb_117840_010 Hb_010261_030--Hb_117840_010 Hb_002609_130 Hb_002609_130 Hb_010261_030--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_010261_030--Hb_062229_010 Hb_005155_010 Hb_005155_010 Hb_010261_030--Hb_005155_010 Hb_002218_070 Hb_002218_070 Hb_010261_030--Hb_002218_070 Hb_010261_030--Hb_001971_020 Hb_043939_010--Hb_000563_120 Hb_043939_010--Hb_062229_010 Hb_006615_190 Hb_006615_190 Hb_043939_010--Hb_006615_190 Hb_014361_130 Hb_014361_130 Hb_043939_010--Hb_014361_130 Hb_000172_010 Hb_000172_010 Hb_043939_010--Hb_000172_010 Hb_009247_030 Hb_009247_030 Hb_043939_010--Hb_009247_030 Hb_004713_050 Hb_004713_050 Hb_000866_390--Hb_004713_050 Hb_003649_030 Hb_003649_030 Hb_000866_390--Hb_003649_030 Hb_000866_390--Hb_085010_010 Hb_000866_390--Hb_000059_080 Hb_000866_390--Hb_001971_020 Hb_001411_100 Hb_001411_100 Hb_000866_390--Hb_001411_100 Hb_003212_010 Hb_003212_010 Hb_000059_080--Hb_003212_010 Hb_000059_080--Hb_007320_020 Hb_003767_010 Hb_003767_010 Hb_000059_080--Hb_003767_010 Hb_000059_080--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_000059_080--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000059_080--Hb_109489_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0116892 1.26675 0.0352154 0.496189 0 0.0307178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0209248 0.0395088 0.750384 0.704212

CAGE analysis