Hb_000603_150

Information

Type -
Description -
Location Contig603: 146736-153040
Sequence    

Annotation

kegg
ID rcu:RCOM_0707670
description GTP-binding protein (p) alpha subunit, gpa1, putative
nr
ID XP_012077180.1
description PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
swissprot
ID Q40224
description Guanine nucleotide-binding protein alpha-1 subunit OS=Lupinus luteus GN=GPA1 PE=2 SV=1
trembl
ID B9RQY3
description GTP-binding protein (P) alpha subunit, gpa1, putative OS=Ricinus communis GN=RCOM_0707670 PE=4 SV=1
Gene Ontology
ID GO:0005789
description guanine nucleotide-binding protein alpha-1 subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50652: 146930-152929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_150 0.0 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
2 Hb_006455_120 0.058516659 - - n6-DNA-methyltransferase, putative [Ricinus communis]
3 Hb_001159_130 0.0603912825 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
4 Hb_000205_300 0.0615924966 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
5 Hb_000120_670 0.0626868379 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
6 Hb_000580_180 0.0630336512 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003549_150 0.0637241588 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
8 Hb_022115_020 0.0657129146 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
9 Hb_001408_040 0.0659023183 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
10 Hb_001584_120 0.0666706895 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
11 Hb_011037_030 0.068588142 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
12 Hb_000025_180 0.0686991327 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
13 Hb_000300_500 0.0687345101 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
14 Hb_000019_030 0.0692314109 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
15 Hb_155159_020 0.0697135334 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
16 Hb_001635_090 0.0700696677 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
17 Hb_172632_120 0.0708838164 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001252_120 0.0713795973 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
19 Hb_006634_070 0.071958031 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
20 Hb_002205_110 0.0730964838 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000603_150 Hb_000603_150 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_000603_150--Hb_001159_130 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150 Hb_006634_070 Hb_006634_070 Hb_006455_120--Hb_006634_070 Hb_011037_030 Hb_011037_030 Hb_006455_120--Hb_011037_030 Hb_000300_500 Hb_000300_500 Hb_006455_120--Hb_000300_500 Hb_006455_120--Hb_000580_180 Hb_000156_010 Hb_000156_010 Hb_006455_120--Hb_000156_010 Hb_000116_270 Hb_000116_270 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_004310_020 Hb_004310_020 Hb_000205_300--Hb_004310_020 Hb_158062_010 Hb_158062_010 Hb_000205_300--Hb_158062_010 Hb_000205_300--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_000205_300--Hb_003693_070 Hb_010712_030 Hb_010712_030 Hb_000205_300--Hb_010712_030 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_005144_160 Hb_005144_160 Hb_000580_180--Hb_005144_160 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_001142_030 Hb_001142_030 Hb_000580_180--Hb_001142_030 Hb_002863_050 Hb_002863_050 Hb_000580_180--Hb_002863_050 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001051_080 Hb_001051_080 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.29595 7.99463 8.05102 13.3409 8.78565 11.1801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.90469 9.29684 10.5973 9.17271 5.14964

CAGE analysis