Hb_000603_200

Information

Type -
Description -
Location Contig603: 186998-207568
Sequence    

Annotation

kegg
ID rcu:RCOM_0707600
description myosin XI, putative
nr
ID XP_012077186.1
description PREDICTED: myosin-15 [Jatropha curcas]
swissprot
ID Q0WPU1
description Myosin-15 OS=Arabidopsis thaliana GN=XI-I PE=1 SV=1
trembl
ID A0A067KD06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07593 PE=4 SV=1
Gene Ontology
ID GO:0000166
description myosin-15 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50658: 187350-188447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_200 0.0 - - PREDICTED: myosin-15 [Jatropha curcas]
2 Hb_000483_370 0.0860523794 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001252_160 0.086569437 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
4 Hb_002989_080 0.0892360969 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
5 Hb_003507_020 0.0947830953 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
6 Hb_043637_010 0.1037216521 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
7 Hb_007178_010 0.1060984318 - - pseudo-hevein [Hevea brasiliensis]
8 Hb_001635_220 0.106685163 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
9 Hb_098315_100 0.1104472354 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
10 Hb_000155_080 0.111326337 - - guanylate-binding family protein [Populus trichocarpa]
11 Hb_009193_130 0.1129930702 - - hypothetical protein RCOM_1620550 [Ricinus communis]
12 Hb_007158_030 0.1143904117 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_002627_060 0.1152681197 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
14 Hb_002232_180 0.117807047 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
15 Hb_000270_400 0.1186614939 - - lipase, putative [Ricinus communis]
16 Hb_007810_040 0.1194352235 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
17 Hb_019654_070 0.1199856338 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
18 Hb_000329_620 0.1208099056 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
19 Hb_003906_110 0.1215605952 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
20 Hb_005488_100 0.1230347949 - - hypothetical protein JCGZ_00295 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_200 Hb_000603_200 Hb_000483_370 Hb_000483_370 Hb_000603_200--Hb_000483_370 Hb_001252_160 Hb_001252_160 Hb_000603_200--Hb_001252_160 Hb_002989_080 Hb_002989_080 Hb_000603_200--Hb_002989_080 Hb_003507_020 Hb_003507_020 Hb_000603_200--Hb_003507_020 Hb_043637_010 Hb_043637_010 Hb_000603_200--Hb_043637_010 Hb_007178_010 Hb_007178_010 Hb_000603_200--Hb_007178_010 Hb_001846_080 Hb_001846_080 Hb_000483_370--Hb_001846_080 Hb_002172_030 Hb_002172_030 Hb_000483_370--Hb_002172_030 Hb_000172_530 Hb_000172_530 Hb_000483_370--Hb_000172_530 Hb_006478_070 Hb_006478_070 Hb_000483_370--Hb_006478_070 Hb_001635_220 Hb_001635_220 Hb_000483_370--Hb_001635_220 Hb_001252_160--Hb_003507_020 Hb_000061_410 Hb_000061_410 Hb_001252_160--Hb_000061_410 Hb_002835_190 Hb_002835_190 Hb_001252_160--Hb_002835_190 Hb_000329_620 Hb_000329_620 Hb_001252_160--Hb_000329_620 Hb_003627_020 Hb_003627_020 Hb_001252_160--Hb_003627_020 Hb_002843_160 Hb_002843_160 Hb_002989_080--Hb_002843_160 Hb_003906_110 Hb_003906_110 Hb_002989_080--Hb_003906_110 Hb_002989_080--Hb_007178_010 Hb_004545_150 Hb_004545_150 Hb_002989_080--Hb_004545_150 Hb_002232_180 Hb_002232_180 Hb_002989_080--Hb_002232_180 Hb_003507_020--Hb_043637_010 Hb_003507_020--Hb_003627_020 Hb_000853_370 Hb_000853_370 Hb_003507_020--Hb_000853_370 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_170116_010 Hb_170116_010 Hb_043637_010--Hb_170116_010 Hb_043637_010--Hb_007810_040 Hb_003304_080 Hb_003304_080 Hb_043637_010--Hb_003304_080 Hb_001628_110 Hb_001628_110 Hb_043637_010--Hb_001628_110 Hb_007178_010--Hb_002232_180 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_007178_010--Hb_003906_110 Hb_010931_100 Hb_010931_100 Hb_007178_010--Hb_010931_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.151 6.09546 0.744499 0.799927 105.947 119.812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.0883 37.0988 47.7432 6.45016 0.231064

CAGE analysis