Hb_000603_210

Information

Type -
Description -
Location Contig603: 218550-226043
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23660g
description POPTRDRAFT_561578, POPTRDRAFT_561579; hypothetical protein
nr
ID XP_002309459.2
description hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
swissprot
ID F4HWY6
description Myosin-11 OS=Arabidopsis thaliana GN=XI-E PE=3 SV=1
trembl
ID B9HCR4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23660g PE=4 SV=2
Gene Ontology
ID GO:0016459
description myosin-15-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50659: 220594-221341 , PASA_asmbl_50660: 222525-226094
cDNA
(Sanger)
(ID:Location)		 001_L14.ab1: 224558-226073 , 022_A20.ab1: 224624-226077 , 028_K13.ab1: 223436-225985 , 036_A20.ab1: 224580-226077 , 048_E05.ab1: 224556-226073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_210 0.0 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
2 Hb_000300_400 0.0837874865 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
3 Hb_003777_230 0.1179894677 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
4 Hb_002235_230 0.1228898203 - - latex abundant protein 1 [Hevea brasiliensis]
5 Hb_006816_440 0.1230699823 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_000444_030 0.1257342999 - - PREDICTED: expansin-A20 [Jatropha curcas]
7 Hb_149683_010 0.1319530752 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
8 Hb_001723_080 0.1455355586 - - hypothetical protein L484_026139 [Morus notabilis]
9 Hb_000052_010 0.1514011524 - - hypothetical protein M569_08416, partial [Genlisea aurea]
10 Hb_001266_050 0.1524129308 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
11 Hb_037373_010 0.1527691163 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
12 Hb_000184_180 0.1539273977 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
13 Hb_001514_180 0.1540340888 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
14 Hb_000190_110 0.1564092992 - - -
15 Hb_001741_090 0.1590118187 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
16 Hb_001279_250 0.1643374228 - - PREDICTED: pectate lyase-like [Jatropha curcas]
17 Hb_000454_110 0.1665429376 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
18 Hb_005539_210 0.1667980909 - - -
19 Hb_010166_020 0.1672689441 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
20 Hb_007741_040 0.1701019956 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_210 Hb_000603_210 Hb_000300_400 Hb_000300_400 Hb_000603_210--Hb_000300_400 Hb_003777_230 Hb_003777_230 Hb_000603_210--Hb_003777_230 Hb_002235_230 Hb_002235_230 Hb_000603_210--Hb_002235_230 Hb_006816_440 Hb_006816_440 Hb_000603_210--Hb_006816_440 Hb_000444_030 Hb_000444_030 Hb_000603_210--Hb_000444_030 Hb_149683_010 Hb_149683_010 Hb_000603_210--Hb_149683_010 Hb_005539_210 Hb_005539_210 Hb_000300_400--Hb_005539_210 Hb_000300_400--Hb_149683_010 Hb_000300_400--Hb_006816_440 Hb_000300_400--Hb_002235_230 Hb_001723_080 Hb_001723_080 Hb_000300_400--Hb_001723_080 Hb_000052_010 Hb_000052_010 Hb_003777_230--Hb_000052_010 Hb_010166_020 Hb_010166_020 Hb_003777_230--Hb_010166_020 Hb_007741_040 Hb_007741_040 Hb_003777_230--Hb_007741_040 Hb_001007_050 Hb_001007_050 Hb_003777_230--Hb_001007_050 Hb_004055_060 Hb_004055_060 Hb_003777_230--Hb_004055_060 Hb_002235_230--Hb_006816_440 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_002235_230--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_002235_230--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_002235_230--Hb_001741_090 Hb_001741_080 Hb_001741_080 Hb_002235_230--Hb_001741_080 Hb_006816_440--Hb_149683_010 Hb_000184_180 Hb_000184_180 Hb_006816_440--Hb_000184_180 Hb_006816_440--Hb_000444_030 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010 Hb_000444_030--Hb_001741_080 Hb_000444_030--Hb_000184_180 Hb_001514_180 Hb_001514_180 Hb_000444_030--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010 Hb_149683_010--Hb_000184_180 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.097 3.87743 0.272244 0.549057 98.0057 148.027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
637.022 349.455 232.047 13.7221 0.385964

CAGE analysis