Hb_000603_220

Information

Type -
Description -
Location Contig603: 230711-232932
Sequence    

Annotation

kegg
ID cit:102620444
description MADS-box transcription factor 18-like
nr
ID XP_012077187.1
description PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KG77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07594 PE=4 SV=1
Gene Ontology
ID GO:0005488
description mads-box transcription factor 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_220 0.0 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
2 Hb_000330_170 0.1053283177 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
3 Hb_007317_220 0.1135258042 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
4 Hb_005063_010 0.1272357191 - - HEV1.1 [Hevea brasiliensis]
5 Hb_033448_010 0.1272462679 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
6 Hb_002200_120 0.138239062 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000369_090 0.1460047945 - - -
8 Hb_000563_530 0.1500181089 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
9 Hb_077562_040 0.1511525091 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
10 Hb_180992_010 0.1513865759 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
11 Hb_004852_020 0.1514329402 - - -
12 Hb_134789_010 0.1515606125 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_000831_060 0.1527930752 - - 17.5 kd heat shock family protein [Populus trichocarpa]
14 Hb_073973_110 0.1532616536 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
15 Hb_023675_010 0.1533827001 - - -
16 Hb_000061_160 0.1535042208 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
17 Hb_002038_060 0.1571557652 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
18 Hb_017134_040 0.1579191937 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
19 Hb_005348_080 0.1594546953 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
20 Hb_115919_020 0.1596513323 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000603_220 Hb_000603_220 Hb_000330_170 Hb_000330_170 Hb_000603_220--Hb_000330_170 Hb_007317_220 Hb_007317_220 Hb_000603_220--Hb_007317_220 Hb_005063_010 Hb_005063_010 Hb_000603_220--Hb_005063_010 Hb_033448_010 Hb_033448_010 Hb_000603_220--Hb_033448_010 Hb_002200_120 Hb_002200_120 Hb_000603_220--Hb_002200_120 Hb_000369_090 Hb_000369_090 Hb_000603_220--Hb_000369_090 Hb_000061_160 Hb_000061_160 Hb_000330_170--Hb_000061_160 Hb_000330_170--Hb_002200_120 Hb_000330_170--Hb_033448_010 Hb_000777_060 Hb_000777_060 Hb_000330_170--Hb_000777_060 Hb_000330_170--Hb_000369_090 Hb_004852_020 Hb_004852_020 Hb_007317_220--Hb_004852_020 Hb_002374_340 Hb_002374_340 Hb_007317_220--Hb_002374_340 Hb_017134_040 Hb_017134_040 Hb_007317_220--Hb_017134_040 Hb_000933_140 Hb_000933_140 Hb_007317_220--Hb_000933_140 Hb_008016_010 Hb_008016_010 Hb_007317_220--Hb_008016_010 Hb_023675_010 Hb_023675_010 Hb_007317_220--Hb_023675_010 Hb_005063_010--Hb_017134_040 Hb_186982_030 Hb_186982_030 Hb_005063_010--Hb_186982_030 Hb_000329_610 Hb_000329_610 Hb_005063_010--Hb_000329_610 Hb_026048_090 Hb_026048_090 Hb_005063_010--Hb_026048_090 Hb_002038_060 Hb_002038_060 Hb_005063_010--Hb_002038_060 Hb_003627_020 Hb_003627_020 Hb_005063_010--Hb_003627_020 Hb_000563_530 Hb_000563_530 Hb_033448_010--Hb_000563_530 Hb_033448_010--Hb_000369_090 Hb_000184_120 Hb_000184_120 Hb_033448_010--Hb_000184_120 Hb_033448_010--Hb_002200_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_000366_100 Hb_000366_100 Hb_033448_010--Hb_000366_100 Hb_002200_120--Hb_000184_120 Hb_002200_120--Hb_000563_530 Hb_002200_120--Hb_000369_090 Hb_002200_120--Hb_000061_160 Hb_000369_090--Hb_000563_530 Hb_000369_090--Hb_000184_120 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.74894 0.219986 0 0.0589699 10.3902 13.9958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4021 11.3989 6.50431 2.03621 0

CAGE analysis