Hb_000603_280

Information

Type -
Description -
Location Contig603: 288763-294697
Sequence    

Annotation

kegg
ID rcu:RCOM_0707440
description rad7, putative
nr
ID XP_012077194.1
description PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
swissprot
ID Q96IG2
description F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2
trembl
ID A0A067KD11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07598 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50666: 289037-294521 , PASA_asmbl_50667: 290036-290217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_280 0.0 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
2 Hb_002843_120 0.0520678839 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
3 Hb_000077_140 0.0567364005 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_007163_120 0.0591869642 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
5 Hb_005653_090 0.0626323293 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
6 Hb_008406_200 0.0634861369 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
7 Hb_013399_100 0.0667154193 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001409_020 0.0684831448 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
9 Hb_003504_030 0.0704547582 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
10 Hb_000172_430 0.0713840859 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005000_190 0.0713856356 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
12 Hb_024621_040 0.0740561319 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
13 Hb_000331_670 0.0742623206 - - PREDICTED: protein tipD [Jatropha curcas]
14 Hb_015934_040 0.0752705638 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
15 Hb_000684_250 0.0753172483 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
16 Hb_000327_270 0.0756378548 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
17 Hb_000331_680 0.0757516891 - - Protein bem46, putative [Ricinus communis]
18 Hb_003168_110 0.0761217592 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
19 Hb_000479_220 0.076556868 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
20 Hb_001248_060 0.0766210381 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000603_280 Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_000603_280--Hb_002843_120 Hb_000077_140 Hb_000077_140 Hb_000603_280--Hb_000077_140 Hb_007163_120 Hb_007163_120 Hb_000603_280--Hb_007163_120 Hb_005653_090 Hb_005653_090 Hb_000603_280--Hb_005653_090 Hb_008406_200 Hb_008406_200 Hb_000603_280--Hb_008406_200 Hb_013399_100 Hb_013399_100 Hb_000603_280--Hb_013399_100 Hb_002267_140 Hb_002267_140 Hb_002843_120--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_002843_120--Hb_138596_010 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_002843_120--Hb_013399_100 Hb_000331_680 Hb_000331_680 Hb_000077_140--Hb_000331_680 Hb_000077_140--Hb_003504_030 Hb_000069_310 Hb_000069_310 Hb_000077_140--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_000077_140--Hb_000915_180 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_005653_090--Hb_000331_680 Hb_005653_090--Hb_003464_090 Hb_005653_090--Hb_008406_200 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_001409_020 Hb_001409_020 Hb_008406_200--Hb_001409_020 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_013399_100--Hb_001409_020 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_013399_100--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1631 11.6886 7.57049 7.91459 6.79759 10.127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.14721 7.32513 11.313 7.59202 7.19432

CAGE analysis