Hb_000604_050

Information

Type -
Description -
Location Contig604: 179202-194709
Sequence    

Annotation

kegg
ID vvi:100262967
description mechanosensitive ion channel protein 10-like
nr
ID XP_012077019.1
description PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID A0A067KCM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07463 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50682: 179390-180058 , PASA_asmbl_50683: 180071-180241 , PASA_asmbl_50684: 181005-181229 , PASA_asmbl_50685: 182070-184121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000604_050 0.0 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
2 Hb_003906_150 0.0898171352 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
3 Hb_000270_530 0.1015132367 - - hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
4 Hb_003529_010 0.1030337054 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
5 Hb_004007_190 0.1066119899 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
6 Hb_103149_010 0.1083083797 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
7 Hb_008566_070 0.1117876488 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001318_180 0.1143047534 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
9 Hb_001675_260 0.1152550906 - - nitrate transporter, putative [Ricinus communis]
10 Hb_012395_260 0.1171563702 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
11 Hb_000983_110 0.1184442796 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
12 Hb_002783_210 0.1210489833 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
13 Hb_000702_040 0.1214097885 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_005643_080 0.1231211512 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
15 Hb_001195_650 0.1240792395 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
16 Hb_004586_230 0.1264930821 - - conserved hypothetical protein [Ricinus communis]
17 Hb_111985_090 0.1335871151 - - hypothetical protein RCOM_1595950 [Ricinus communis]
18 Hb_003939_090 0.1339194463 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
19 Hb_002025_120 0.1359833073 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
20 Hb_000567_220 0.1390350356 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]

Gene co-expression network

sample Hb_000604_050 Hb_000604_050 Hb_003906_150 Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_003529_010 Hb_003529_010 Hb_000604_050--Hb_003529_010 Hb_004007_190 Hb_004007_190 Hb_000604_050--Hb_004007_190 Hb_103149_010 Hb_103149_010 Hb_000604_050--Hb_103149_010 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070 Hb_001318_180 Hb_001318_180 Hb_003906_150--Hb_001318_180 Hb_003906_150--Hb_008566_070 Hb_111985_090 Hb_111985_090 Hb_003906_150--Hb_111985_090 Hb_003906_150--Hb_004007_190 Hb_000983_110 Hb_000983_110 Hb_003906_150--Hb_000983_110 Hb_000702_040 Hb_000702_040 Hb_000270_530--Hb_000702_040 Hb_000270_530--Hb_103149_010 Hb_000172_150 Hb_000172_150 Hb_000270_530--Hb_000172_150 Hb_000567_220 Hb_000567_220 Hb_000270_530--Hb_000567_220 Hb_000270_530--Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_003529_010--Hb_001675_260 Hb_003529_010--Hb_004007_190 Hb_003529_010--Hb_001318_180 Hb_000021_010 Hb_000021_010 Hb_003529_010--Hb_000021_010 Hb_002783_210 Hb_002783_210 Hb_003529_010--Hb_002783_210 Hb_004007_190--Hb_001318_180 Hb_002025_120 Hb_002025_120 Hb_004007_190--Hb_002025_120 Hb_004007_190--Hb_001675_260 Hb_004007_190--Hb_000021_010 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_103149_010--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_103149_010--Hb_004586_230 Hb_001016_040 Hb_001016_040 Hb_103149_010--Hb_001016_040 Hb_003939_090 Hb_003939_090 Hb_103149_010--Hb_003939_090 Hb_008566_070--Hb_111985_090 Hb_008200_010 Hb_008200_010 Hb_008566_070--Hb_008200_010 Hb_005643_080 Hb_005643_080 Hb_008566_070--Hb_005643_080 Hb_001502_010 Hb_001502_010 Hb_008566_070--Hb_001502_010 Hb_000227_350 Hb_000227_350 Hb_008566_070--Hb_000227_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.26579 11.3938 2.12412 17.4691 0.0809414 0.0429172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.024084 0.018953 0.0908823 0.709717 1.35865

CAGE analysis