Hb_000606_080

Information

Type -
Description -
Location Contig606: 171103-172201
Sequence    

Annotation

kegg
ID mdm:103408238
description RNA-binding protein Nova-2-like
nr
ID XP_008345321.1
description PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
swissprot
ID Q9UNW9
description RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1
trembl
ID A0A061FVP5
description Binding to TOMV RNA 1L (Long form) isoform 7 OS=Theobroma cacao GN=TCM_043373 PE=4 SV=1
Gene Ontology
ID GO:0003727
description rna-binding protein nova-2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50762: 168966-194002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000606_080 0.0 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
2 Hb_002067_120 0.0897074817 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
3 Hb_041392_010 0.0931287254 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
4 Hb_003502_080 0.0996296437 - - vacuolar protein sorting, putative [Ricinus communis]
5 Hb_000197_210 0.100513052 - - phosphatidylinositol transporter, putative [Ricinus communis]
6 Hb_000679_150 0.1022095343 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
7 Hb_006951_020 0.1041483069 - - Rop3 [Hevea brasiliensis]
8 Hb_003376_050 0.10702462 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_002774_070 0.1095840088 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
10 Hb_000107_200 0.1098060683 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
11 Hb_023001_050 0.1131897039 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
12 Hb_010565_010 0.1137387525 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
13 Hb_002529_060 0.1139906759 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
14 Hb_006816_390 0.1150549917 - - protein phosphatase, putative [Ricinus communis]
15 Hb_010381_120 0.1174776595 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
16 Hb_126295_010 0.1190977573 - - PREDICTED: protein SEH1 [Jatropha curcas]
17 Hb_000198_070 0.1200422914 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
18 Hb_000606_090 0.1216893378 - - Far upstream element-binding protein, putative [Ricinus communis]
19 Hb_033312_140 0.1217831117 - - RNA and export factor-binding family protein [Populus trichocarpa]
20 Hb_008406_140 0.1218147418 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000606_080 Hb_000606_080 Hb_002067_120 Hb_002067_120 Hb_000606_080--Hb_002067_120 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_003502_080 Hb_003502_080 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_006951_020 Hb_006951_020 Hb_000606_080--Hb_006951_020 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_010565_010 Hb_010565_010 Hb_002067_120--Hb_010565_010 Hb_002067_120--Hb_006951_020 Hb_000107_200 Hb_000107_200 Hb_002067_120--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_002067_120--Hb_126295_010 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_003656_140 Hb_003656_140 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_150204_010 Hb_150204_010 Hb_041392_010--Hb_150204_010 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_000465_430 Hb_000465_430 Hb_003502_080--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_003502_080--Hb_005016_170 Hb_033843_010 Hb_033843_010 Hb_003502_080--Hb_033843_010 Hb_003502_080--Hb_023001_050 Hb_021409_020 Hb_021409_020 Hb_003502_080--Hb_021409_020 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_008406_140 Hb_008406_140 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000497_230 Hb_000497_230 Hb_000197_210--Hb_000497_230 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_007380_090 Hb_007380_090 Hb_000679_150--Hb_007380_090 Hb_003363_010 Hb_003363_010 Hb_000679_150--Hb_003363_010 Hb_006663_070 Hb_006663_070 Hb_000679_150--Hb_006663_070 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030 Hb_000322_100 Hb_000322_100 Hb_006951_020--Hb_000322_100 Hb_000755_030 Hb_000755_030 Hb_006951_020--Hb_000755_030 Hb_001047_030 Hb_001047_030 Hb_006951_020--Hb_001047_030 Hb_007477_080 Hb_007477_080 Hb_006951_020--Hb_007477_080 Hb_006951_020--Hb_003502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2318 6.69884 11.3294 21.2247 20.1676 44.5415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9603 10.8151 12.7312 6.87194 6.57429

CAGE analysis