Hb_000606_090

Information

Type -
Description -
Location Contig606: 184528-193614
Sequence    

Annotation

kegg
ID rcu:RCOM_0350300
description Far upstream element-binding protein, putative (EC:3.1.2.15)
nr
ID XP_002532622.1
description Far upstream element-binding protein, putative [Ricinus communis]
swissprot
ID Q9LZ82
description Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1
trembl
ID B9T303
description Far upstream element-binding protein, putative OS=Ricinus communis GN=RCOM_0350300 PE=4 SV=1
Gene Ontology
ID GO:0003727
description binding to tomv rna 1l (long form) isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50762: 168966-194002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000606_090 0.0 - - Far upstream element-binding protein, putative [Ricinus communis]
2 Hb_001135_060 0.0638360153 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
3 Hb_000212_240 0.0685679153 - - short-chain dehydrogenase, putative [Ricinus communis]
4 Hb_000494_040 0.0696183492 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
5 Hb_003665_060 0.0727678596 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
6 Hb_001444_010 0.0754632206 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
7 Hb_000025_110 0.0769799505 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
8 Hb_001369_180 0.0772659198 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
9 Hb_003030_070 0.0774466424 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
10 Hb_000230_560 0.0779486897 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
11 Hb_000367_130 0.079984198 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003125_160 0.0822685914 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
13 Hb_002947_030 0.0830506918 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
14 Hb_033642_030 0.083772969 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
15 Hb_030131_040 0.0838571143 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
16 Hb_000107_200 0.0846094006 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
17 Hb_008643_210 0.0848087428 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
18 Hb_023480_010 0.0852794381 - - cellular nucleic acid binding protein, putative [Ricinus communis]
19 Hb_007262_020 0.0860504888 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
20 Hb_002045_240 0.0871800891 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000606_090 Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000606_090--Hb_001135_060 Hb_000212_240 Hb_000212_240 Hb_000606_090--Hb_000212_240 Hb_000494_040 Hb_000494_040 Hb_000606_090--Hb_000494_040 Hb_003665_060 Hb_003665_060 Hb_000606_090--Hb_003665_060 Hb_001444_010 Hb_001444_010 Hb_000606_090--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000606_090--Hb_000025_110 Hb_033642_030 Hb_033642_030 Hb_001135_060--Hb_033642_030 Hb_001135_060--Hb_000494_040 Hb_032050_040 Hb_032050_040 Hb_001135_060--Hb_032050_040 Hb_002716_130 Hb_002716_130 Hb_001135_060--Hb_002716_130 Hb_001135_060--Hb_003665_060 Hb_004881_020 Hb_004881_020 Hb_000212_240--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_000212_240--Hb_006252_040 Hb_000212_240--Hb_002716_130 Hb_000212_240--Hb_000025_110 Hb_004117_130 Hb_004117_130 Hb_000212_240--Hb_004117_130 Hb_005862_010 Hb_005862_010 Hb_000494_040--Hb_005862_010 Hb_000373_240 Hb_000373_240 Hb_000494_040--Hb_000373_240 Hb_163950_030 Hb_163950_030 Hb_000494_040--Hb_163950_030 Hb_000010_090 Hb_000010_090 Hb_000494_040--Hb_000010_090 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_007317_110 Hb_007317_110 Hb_003665_060--Hb_007317_110 Hb_000230_560 Hb_000230_560 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_001444_010--Hb_000025_110 Hb_000618_030 Hb_000618_030 Hb_001444_010--Hb_000618_030 Hb_000913_050 Hb_000913_050 Hb_001444_010--Hb_000913_050 Hb_000679_130 Hb_000679_130 Hb_001444_010--Hb_000679_130 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_000025_110--Hb_006252_040 Hb_000025_110--Hb_000618_030 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.6353 21.6185 35.262 41.8127 48.5898 77.5067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.1622 34.6432 31.6584 23.6279 35.5135

CAGE analysis