Hb_000608_030

Information

Type -
Description -
Location Contig608: 12217-14325
Sequence    

Annotation

kegg
ID rcu:RCOM_1078690
description Dephospho-CoA kinase, putative (EC:2.7.1.24)
nr
ID KDP26861.1
description hypothetical protein JCGZ_18019 [Jatropha curcas]
swissprot
ID Q9ZQH0
description Dephospho-CoA kinase OS=Arabidopsis thaliana GN=COAE PE=2 SV=1
trembl
ID A0A067JSC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18019 PE=3 SV=1
Gene Ontology
ID GO:0004140
description dephospho- kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50812: 11635-11977 , PASA_asmbl_50813: 12213-14723
cDNA
(Sanger)
(ID:Location)		 018_L20.ab1: 12223-14195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_030 0.0 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
2 Hb_000384_090 0.0604012728 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
3 Hb_003005_020 0.0632438708 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
4 Hb_000815_210 0.0727037732 - - uncoupling protein 3, partial [Manihot esculenta]
5 Hb_003406_010 0.0795535092 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
6 Hb_000943_070 0.0820437026 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
7 Hb_003120_060 0.0896292924 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
8 Hb_002391_300 0.0899046409 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
9 Hb_011673_030 0.0914745221 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
10 Hb_001866_110 0.0919875593 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
11 Hb_000373_240 0.0944674836 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
12 Hb_007192_080 0.0950586356 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
13 Hb_144598_030 0.0962929883 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
14 Hb_023344_030 0.0966138968 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
15 Hb_000386_040 0.0975728033 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_002408_010 0.0977213209 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_000014_150 0.0981723136 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_003195_060 0.0990571347 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
19 Hb_002609_110 0.1001872825 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
20 Hb_002149_020 0.1005575591 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_030 Hb_000608_030 Hb_000384_090 Hb_000384_090 Hb_000608_030--Hb_000384_090 Hb_003005_020 Hb_003005_020 Hb_000608_030--Hb_003005_020 Hb_000815_210 Hb_000815_210 Hb_000608_030--Hb_000815_210 Hb_003406_010 Hb_003406_010 Hb_000608_030--Hb_003406_010 Hb_000943_070 Hb_000943_070 Hb_000608_030--Hb_000943_070 Hb_003120_060 Hb_003120_060 Hb_000608_030--Hb_003120_060 Hb_000384_090--Hb_003005_020 Hb_000384_090--Hb_003120_060 Hb_063134_010 Hb_063134_010 Hb_000384_090--Hb_063134_010 Hb_002609_110 Hb_002609_110 Hb_000384_090--Hb_002609_110 Hb_003195_060 Hb_003195_060 Hb_000384_090--Hb_003195_060 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_000051_070 Hb_000051_070 Hb_000815_210--Hb_000051_070 Hb_000538_200 Hb_000538_200 Hb_000815_210--Hb_000538_200 Hb_000815_210--Hb_003406_010 Hb_004600_040 Hb_004600_040 Hb_000815_210--Hb_004600_040 Hb_011673_030 Hb_011673_030 Hb_000815_210--Hb_011673_030 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_003609_040 Hb_003609_040 Hb_000943_070--Hb_003609_040 Hb_003642_060 Hb_003642_060 Hb_000943_070--Hb_003642_060 Hb_005306_110 Hb_005306_110 Hb_000943_070--Hb_005306_110 Hb_001214_130 Hb_001214_130 Hb_000943_070--Hb_001214_130 Hb_000943_070--Hb_003406_010 Hb_000943_070--Hb_000645_050 Hb_000019_230 Hb_000019_230 Hb_003120_060--Hb_000019_230 Hb_003120_060--Hb_001214_130 Hb_000188_100 Hb_000188_100 Hb_003120_060--Hb_000188_100 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003038_030 Hb_003038_030 Hb_003120_060--Hb_003038_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63226 2.43565 1.77761 2.54072 6.53315 8.85233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.17193 4.55898 4.49589 1.63954 2.08842

CAGE analysis