Hb_000608_080

Information

Type -
Description -
Location Contig608: 29133-30950
Sequence    

Annotation

kegg
ID pxb:103934328
description pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
nr
ID KDP26115.1
description hypothetical protein JCGZ_22216 [Jatropha curcas]
swissprot
ID Q9SZ10
description Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1
trembl
ID A0A067K1I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22216 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_080 0.0 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
2 Hb_000141_230 0.0376485842 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
3 Hb_004544_080 0.0400027849 - - lectin protein kinase [Populus trichocarpa]
4 Hb_003462_150 0.0421718998 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
5 Hb_000302_060 0.0721608482 - - unnamed protein product [Vitis vinifera]
6 Hb_009515_010 0.0824578883 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
7 Hb_002999_090 0.0909613978 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000472_030 0.0915659063 - - -
9 Hb_002204_030 0.0922367483 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
10 Hb_002475_020 0.0927252489 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
11 Hb_002556_020 0.0949023712 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
12 Hb_012762_070 0.0954814624 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
13 Hb_166813_010 0.0984733804 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_002622_020 0.0997170571 - - -
15 Hb_000334_250 0.1109824125 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_001971_070 0.113837999 - - unnamed protein product [Coffea canephora]
17 Hb_005228_170 0.1144456965 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
18 Hb_001901_010 0.1184789867 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
19 Hb_005218_070 0.122181362 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
20 Hb_000951_030 0.1240793367 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_080 Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_000608_080--Hb_000141_230 Hb_004544_080 Hb_004544_080 Hb_000608_080--Hb_004544_080 Hb_003462_150 Hb_003462_150 Hb_000608_080--Hb_003462_150 Hb_000302_060 Hb_000302_060 Hb_000608_080--Hb_000302_060 Hb_009515_010 Hb_009515_010 Hb_000608_080--Hb_009515_010 Hb_002999_090 Hb_002999_090 Hb_000608_080--Hb_002999_090 Hb_000141_230--Hb_003462_150 Hb_000141_230--Hb_004544_080 Hb_000141_230--Hb_000302_060 Hb_000141_230--Hb_002999_090 Hb_002556_020 Hb_002556_020 Hb_000141_230--Hb_002556_020 Hb_004544_080--Hb_003462_150 Hb_004544_080--Hb_002999_090 Hb_004544_080--Hb_002556_020 Hb_002475_020 Hb_002475_020 Hb_004544_080--Hb_002475_020 Hb_003462_150--Hb_002999_090 Hb_003462_150--Hb_002556_020 Hb_003462_150--Hb_002475_020 Hb_002204_030 Hb_002204_030 Hb_000302_060--Hb_002204_030 Hb_000302_060--Hb_009515_010 Hb_000302_060--Hb_002556_020 Hb_000951_030 Hb_000951_030 Hb_000302_060--Hb_000951_030 Hb_000302_060--Hb_002475_020 Hb_009515_010--Hb_002204_030 Hb_000334_250 Hb_000334_250 Hb_009515_010--Hb_000334_250 Hb_005218_070 Hb_005218_070 Hb_009515_010--Hb_005218_070 Hb_009515_010--Hb_000141_230 Hb_002999_090--Hb_002556_020 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002999_090--Hb_002475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0165956 0 0.0154476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0576076 0

CAGE analysis