Hb_000608_090

Information

Type -
Description -
Location Contig608: 37517-38581
Sequence    

Annotation

kegg
ID rcu:RCOM_1078570
description hypothetical protein
nr
ID XP_002514856.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFD5
description CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana GN=RIC4 PE=1 SV=1
trembl
ID B9RM87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078570 PE=4 SV=1
Gene Ontology
ID GO:0000904
description crib domain-containing protein ric4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50816: 38324-38638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005616_020 0.0747102512 - - kinase, putative [Ricinus communis]
3 Hb_031330_010 0.0794215625 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
4 Hb_004586_440 0.0810325514 - - Blue copper protein precursor, putative [Ricinus communis]
5 Hb_001158_170 0.0811374619 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003376_060 0.0830188149 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
7 Hb_001456_030 0.0847791749 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
8 Hb_000645_230 0.0860057956 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
9 Hb_004225_120 0.0877152933 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
10 Hb_012114_090 0.0883290678 - - tubulin beta chain, putative [Ricinus communis]
11 Hb_000964_080 0.0898425117 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
12 Hb_001369_480 0.0912018805 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
13 Hb_000684_190 0.091901522 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
14 Hb_000362_030 0.0923053195 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_000413_030 0.0924451894 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
16 Hb_071079_040 0.0924838037 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
17 Hb_000462_120 0.0930089544 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
18 Hb_000699_220 0.0938856412 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
19 Hb_000422_090 0.0940218445 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000339_060 0.0955105308 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_090 Hb_000608_090 Hb_005616_020 Hb_005616_020 Hb_000608_090--Hb_005616_020 Hb_031330_010 Hb_031330_010 Hb_000608_090--Hb_031330_010 Hb_004586_440 Hb_004586_440 Hb_000608_090--Hb_004586_440 Hb_001158_170 Hb_001158_170 Hb_000608_090--Hb_001158_170 Hb_003376_060 Hb_003376_060 Hb_000608_090--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_000608_090--Hb_001456_030 Hb_005616_020--Hb_001456_030 Hb_000462_120 Hb_000462_120 Hb_005616_020--Hb_000462_120 Hb_005616_020--Hb_003376_060 Hb_000699_220 Hb_000699_220 Hb_005616_020--Hb_000699_220 Hb_000413_030 Hb_000413_030 Hb_005616_020--Hb_000413_030 Hb_000645_230 Hb_000645_230 Hb_031330_010--Hb_000645_230 Hb_000483_340 Hb_000483_340 Hb_031330_010--Hb_000483_340 Hb_004884_040 Hb_004884_040 Hb_031330_010--Hb_004884_040 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_071079_040 Hb_071079_040 Hb_031330_010--Hb_071079_040 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_001369_480 Hb_001369_480 Hb_004586_440--Hb_001369_480 Hb_000362_030 Hb_000362_030 Hb_004586_440--Hb_000362_030 Hb_004586_440--Hb_071079_040 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070 Hb_000964_080 Hb_000964_080 Hb_001158_170--Hb_000964_080 Hb_004846_110 Hb_004846_110 Hb_001158_170--Hb_004846_110 Hb_001158_170--Hb_000684_190 Hb_001158_170--Hb_000645_230 Hb_000422_090 Hb_000422_090 Hb_001158_170--Hb_000422_090 Hb_003376_060--Hb_001456_030 Hb_003376_060--Hb_011224_070 Hb_003376_060--Hb_000964_080 Hb_003376_060--Hb_000413_030 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_001456_030--Hb_000964_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.262523 1.73086 5.15286 75.7961 0.239884 0.0715001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.219584 0.258028 0.209466 24.1414

CAGE analysis