Hb_000608_120

Information

Type -
Description -
Location Contig608: 51751-52065
Sequence    

Annotation

kegg
ID rcu:RCOM_1078550
description transcription factor, putative
nr
ID XP_012085757.1
description PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18024 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50818: 51634-52297
cDNA
(Sanger)
(ID:Location)		 009_P05.ab1: 51640-52284 , 036_A09.ab1: 51645-52275 , 038_K24.ab1: 51639-52275 , 039_F04.ab1: 51634-52275 , 048_C21.ab1: 51639-52282 , 053_G24.ab1: 51634-52275

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_120 0.0 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
2 Hb_003494_240 0.0740032121 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
3 Hb_001454_060 0.0760456949 - - uncharacterized protein LOC100527252 [Glycine max]
4 Hb_003581_140 0.0765624573 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
5 Hb_002215_050 0.079750439 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
6 Hb_003638_140 0.0801388979 - - protein binding protein, putative [Ricinus communis]
7 Hb_000703_080 0.0803679484 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
8 Hb_002169_010 0.0843665079 - - PREDICTED: la-related protein 6B [Jatropha curcas]
9 Hb_000172_400 0.0850445854 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_030312_040 0.0853552822 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
11 Hb_002890_340 0.0871313488 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
12 Hb_004046_010 0.088030812 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
13 Hb_001369_060 0.0885244606 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
14 Hb_000358_080 0.0909859793 - - Ribonuclease 3 [Gossypium arboreum]
15 Hb_011496_010 0.0913445336 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
16 Hb_000490_030 0.0922141117 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
17 Hb_000138_040 0.093262155 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
18 Hb_029281_010 0.0947202018 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
19 Hb_001936_050 0.0950254251 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
20 Hb_002039_010 0.0959459807 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_000608_120 Hb_000608_120 Hb_003494_240 Hb_003494_240 Hb_000608_120--Hb_003494_240 Hb_001454_060 Hb_001454_060 Hb_000608_120--Hb_001454_060 Hb_003581_140 Hb_003581_140 Hb_000608_120--Hb_003581_140 Hb_002215_050 Hb_002215_050 Hb_000608_120--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_000608_120--Hb_003638_140 Hb_000703_080 Hb_000703_080 Hb_000608_120--Hb_000703_080 Hb_003494_240--Hb_001454_060 Hb_000703_090 Hb_000703_090 Hb_003494_240--Hb_000703_090 Hb_003494_240--Hb_002215_050 Hb_030312_040 Hb_030312_040 Hb_003494_240--Hb_030312_040 Hb_003494_240--Hb_003638_140 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_001454_060--Hb_000703_080 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_003581_140--Hb_000078_130 Hb_000490_030 Hb_000490_030 Hb_003581_140--Hb_000490_030 Hb_002039_010 Hb_002039_010 Hb_003581_140--Hb_002039_010 Hb_002890_340 Hb_002890_340 Hb_003581_140--Hb_002890_340 Hb_000418_100 Hb_000418_100 Hb_003581_140--Hb_000418_100 Hb_001369_060 Hb_001369_060 Hb_002215_050--Hb_001369_060 Hb_002215_050--Hb_003638_140 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_024714_030 Hb_024714_030 Hb_002215_050--Hb_024714_030 Hb_003638_140--Hb_001369_060 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060 Hb_000284_210 Hb_000284_210 Hb_000703_080--Hb_000284_210 Hb_002097_090 Hb_002097_090 Hb_000703_080--Hb_002097_090 Hb_004934_090 Hb_004934_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1059.25 483.219 84.298 139.423 976.553 1507.25
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
817.44 623.919 908.553 360.868 173.685

CAGE analysis